Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 84.05 | 84.05 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 38.13 | 47.57 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 28.4 | 42.2 |
| PGSC0003DMT400057529 | Potato | nucleus | 29.96 | 40.53 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 27.63 | 40.11 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 27.63 | 37.97 |
| KRH22488 | Soybean | nucleus | 29.57 | 34.39 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 27.63 | 34.13 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 38.91 | 33.44 |
| KRH26865 | Soybean | nucleus | 28.4 | 33.03 |
| PGSC0003DMT400034275 | Potato | cytosol | 12.84 | 29.46 |
| PGSC0003DMT400064406 | Potato | nucleus | 26.07 | 28.88 |
| EES14650 | Sorghum | nucleus | 28.4 | 26.94 |
| GSMUA_Achr11P... | Banana | nucleus | 22.96 | 26.58 |
| Zm00001d049464_P001 | Maize | nucleus | 26.46 | 26.05 |
| Zm00001d024213_P001 | Maize | nucleus | 26.07 | 25.77 |
| PGSC0003DMT400067296 | Potato | nucleus | 12.45 | 24.62 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 33.85 | 24.23 |
| Os08t0178800-01 | Rice | nucleus | 25.68 | 23.49 |
| PGSC0003DMT400068177 | Potato | nucleus | 19.07 | 18.7 |
Protein Annotations
| EMBL:KX576535 | EnsemblPlants:PGSC0003DMT400067337 | EnsemblPlantsGene:PGSC0003DMG400026181 | EntrezGene:102600093 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | PFAM:PF00643 | PFscan:PS50119 | PGSC:PGSC0003DMG400026181 | RefSeq:XP_006360539.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0002958B77 | UniProt:M1CH41 | MapMan:35.2 | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026181]
Coordinates
chr7:+:47790598..47791812
Molecular Weight (calculated)
28140.9 Da
IEP (calculated)
4.366
GRAVY (calculated)
-0.826
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNCELCKGL ARMYCESDNA SLCWDCDAKV HSANFLAARH SRSLLCQVCQ SPTAWSAAGA KLGKTVSVCE KCVDGYYHRD EVEESESVND EGSGTEDEET
101: DYEEDEEDED EIDSEGIQVV PWSNTTPPPP ASSSSSENSS NGCRNVSSKR MREADPDLHS DDDSGSSSCH RKVHTSPAMD ADAGDEAAAI VDSYSSKMRT
201: PAKIQRTDRL TAPRCTSVIE FIRRNNRQRM SSGAAIAELC RLNNDSRTID LESSETS
101: DYEEDEEDED EIDSEGIQVV PWSNTTPPPP ASSSSSENSS NGCRNVSSKR MREADPDLHS DDDSGSSSCH RKVHTSPAMD ADAGDEAAAI VDSYSSKMRT
201: PAKIQRTDRL TAPRCTSVIE FIRRNNRQRM SSGAAIAELC RLNNDSRTID LESSETS
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.