Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14650 | Sorghum | nucleus | 74.23 | 71.22 |
| Zm00001d049464_P001 | Maize | nucleus | 58.08 | 57.85 |
| Os08t0178800-01 | Rice | nucleus | 56.15 | 51.96 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 23.46 | 44.53 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 22.31 | 38.16 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 25.38 | 38.15 |
| Bra019058.1-P | Field mustard | cytosol | 30.0 | 38.05 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 30.0 | 37.5 |
| Solyc10g006750.2.1 | Tomato | nucleus | 15.0 | 37.5 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 25.0 | 36.72 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 21.54 | 36.36 |
| Solyc02g079430.2.1 | Tomato | nucleus | 25.38 | 35.68 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 29.23 | 35.35 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 27.31 | 35.32 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 28.46 | 34.91 |
| CDY42453 | Canola | cytosol | 24.23 | 34.81 |
| CDY18333 | Canola | nucleus | 23.85 | 34.44 |
| Bra002986.1-P | Field mustard | cytosol | 23.85 | 34.07 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 30.0 | 33.91 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 24.23 | 33.69 |
| PGSC0003DMT400057529 | Potato | nucleus | 24.62 | 33.68 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 30.77 | 33.2 |
| KRH22488 | Soybean | nucleus | 28.08 | 33.03 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 28.08 | 32.74 |
| AT5G54470.1 | Thale cress | cytosol | 26.92 | 32.56 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 24.23 | 31.19 |
| KRH26865 | Soybean | nucleus | 26.15 | 30.77 |
| KRH55436 | Soybean | nucleus | 24.62 | 29.63 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 22.69 | 28.64 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 27.69 | 28.02 |
| PGSC0003DMT400064406 | Potato | nucleus | 24.62 | 27.59 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 31.15 | 27.09 |
| GSMUA_Achr11P... | Banana | nucleus | 22.69 | 26.58 |
| PGSC0003DMT400067337 | Potato | nucleus | 25.77 | 26.07 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 28.08 | 24.5 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 31.54 | 22.84 |
Protein Annotations
| EnsemblPlants:Zm00001d024213_P001 | EnsemblPlants:Zm00001d024213_T001 | EnsemblPlantsGene:Zm00001d024213 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | ProteinID:AQK40827.1 | SEG:seg | SMART:SM00336 | UniParc:UPI000842C45C | UniProt:A0A1D6IY42 |
| MapMan:35.2 | : | : | : | : | : |
Description
B-box type zinc finger family protein
Coordinates
chr10:-:56996605..56997874
Molecular Weight (calculated)
26555.9 Da
IEP (calculated)
4.271
GRAVY (calculated)
-0.683
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAWEGGKE KGAATPAPGG ACELCGAMAR VYCGADEATL CWGCDAQVHG ANFLVARHAR ALLCRGCARP TSWRAAGPRL GPSASLCDRC VRRGSGAVGV
101: GGDVEMGGTG DGRGDEEEEE DDDEEDDDVV VEDDDDEEEG EGENQVVPWT EEAEATPPPV ASSTSSSSRE APANGASGGE CAKENMPCST SQTGLLCHNS
201: SSARHGGRSD EVTSSRNGGR FLASGHRKRS PSDFFGSASA QSGSGPPAMN GSNAGIGRNE
101: GGDVEMGGTG DGRGDEEEEE DDDEEDDDVV VEDDDDEEEG EGENQVVPWT EEAEATPPPV ASSTSSSSRE APANGASGGE CAKENMPCST SQTGLLCHNS
201: SSARHGGRSD EVTSSRNGGR FLASGHRKRS PSDFFGSASA QSGSGPPAMN GSNAGIGRNE
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.