Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064406 | Potato | nucleus | 65.38 | 29.31 |
| Solyc02g079430.2.1 | Tomato | nucleus | 48.08 | 27.03 |
| Solyc12g005750.1.1 | Tomato | cytosol | 26.92 | 25.69 |
| Solyc07g052620.1.1 | Tomato | nucleus | 29.81 | 23.85 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 46.15 | 23.76 |
| KRH55436 | Soybean | nucleus | 49.04 | 23.61 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 42.31 | 23.53 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 40.38 | 20.19 |
| GSMUA_Achr11P... | Banana | nucleus | 41.35 | 19.37 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 44.23 | 17.9 |
| Zm00001d049464_P001 | Maize | nucleus | 39.42 | 15.71 |
| EES14650 | Sorghum | nucleus | 39.42 | 15.13 |
| Zm00001d024213_P001 | Maize | nucleus | 37.5 | 15.0 |
| Os08t0178800-01 | Rice | nucleus | 40.38 | 14.95 |
| Solyc06g063280.1.1 | Tomato | nucleus | 36.54 | 14.56 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 42.31 | 12.26 |
Protein Annotations
| EnsemblPlants:Solyc10g006750.2.1 | EnsemblPlantsGene:Solyc10g006750.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 |
| PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | UniParc:UPI000276ADA2 | UniProt:K4CXK6 |
| MapMan:15.5.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:1205986..1206786
Molecular Weight (calculated)
12035.9 Da
IEP (calculated)
9.284
GRAVY (calculated)
-0.180
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNCELCGEN KSMMYCESDQ ANLCWDCDSK VHSANFLVAK HSRNLLCHSC QNSTPWNASG PKLSPTFSLC NSLKSMIMTM RIKLFLYLLL RRVISLPRRR
101: RCVR
101: RCVR
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.