Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14650 | Sorghum | nucleus | 69.35 | 66.79 |
| Zm00001d024213_P001 | Maize | nucleus | 57.85 | 58.08 |
| Os08t0178800-01 | Rice | nucleus | 54.79 | 50.89 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 24.14 | 45.99 |
| Solyc10g006750.2.1 | Tomato | nucleus | 15.71 | 39.42 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 26.44 | 38.98 |
| CDY18333 | Canola | nucleus | 26.05 | 37.78 |
| Bra019058.1-P | Field mustard | cytosol | 29.5 | 37.56 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 29.5 | 37.02 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 21.46 | 36.84 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 28.35 | 36.82 |
| CDY42453 | Canola | cytosol | 25.29 | 36.46 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 24.14 | 36.42 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 21.46 | 36.36 |
| PGSC0003DMT400057529 | Potato | nucleus | 26.44 | 36.32 |
| Bra002986.1-P | Field mustard | cytosol | 25.29 | 36.26 |
| AT5G54470.1 | Thale cress | cytosol | 29.12 | 35.35 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 31.03 | 35.22 |
| Solyc02g079430.2.1 | Tomato | nucleus | 24.9 | 35.14 |
| KRH26865 | Soybean | nucleus | 29.12 | 34.39 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 24.52 | 34.22 |
| KRH22488 | Soybean | nucleus | 28.74 | 33.94 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 29.89 | 32.37 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 24.9 | 32.18 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 27.2 | 31.84 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 26.05 | 31.63 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 25.67 | 31.6 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 24.52 | 31.07 |
| KRH55436 | Soybean | nucleus | 24.52 | 29.63 |
| GSMUA_Achr11P... | Banana | nucleus | 23.75 | 27.93 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 31.8 | 27.76 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 30.65 | 26.85 |
| PGSC0003DMT400067337 | Potato | nucleus | 26.05 | 26.46 |
| PGSC0003DMT400064406 | Potato | nucleus | 22.99 | 25.86 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 25.29 | 25.68 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 31.42 | 22.84 |
Protein Annotations
| MapMan:35.2 | UniProt:A0A1D6PV36 | ProteinID:AQK50450.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | SMART:SM00336 | UniParc:UPI000842FD3E | EnsemblPlantsGene:Zm00001d049464 | EnsemblPlants:Zm00001d049464_P001 | EnsemblPlants:Zm00001d049464_T001 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
B-box type zinc finger family protein
Coordinates
chr4:+:31325915..31327059
Molecular Weight (calculated)
26499.8 Da
IEP (calculated)
4.409
GRAVY (calculated)
-0.734
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAAAAEVG KEKGAATPGP GPGPGGACEL CGAAARVYCG ADEATLCWGC DAQVHGANFL VARHARSLLC RGCARPTPWR AAGPRLGPTV SLCVRCVRRG
101: PAGAVGVGGD EEMGGAGDGD AEDDDDEDDD SEEEEEEEEE EGEGENQVVP WTEDAEATPP PVGSSTSSSS REAPANGAER AAKENAPCST SQPGLCHHAS
201: SARHGGRSDE ATSSRSGGRV LASRHRKRSP SDFFSSDGSP QPGNGTPAAR NCSDAGIARN E
101: PAGAVGVGGD EEMGGAGDGD AEDDDDEDDD SEEEEEEEEE EGEGENQVVP WTEDAEATPP PVGSSTSSSS REAPANGAER AAKENAPCST SQPGLCHHAS
201: SARHGGRSDE ATSSRSGGRV LASRHRKRSP SDFFSSDGSP QPGNGTPAAR NCSDAGIARN E
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.