Factsheet for Bra022722.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28768	Canola	cytosol, nucleus, plastid	49.75	72.99
Bra002986.1-P	Field mustard	cytosol	50.75	56.04
Bra019058.1-P	Field mustard	cytosol	50.75	49.76
AT5G54470.1	Thale cress	cytosol	50.75	47.44
Bra010408.1-P	Field mustard	cytosol, nucleus, plastid	49.25	41.08
Bra026361.1-P	Field mustard	cytosol, nucleus, plastid	46.27	40.43
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	38.81	37.5
GSMUA_Achr8P07440_001	Banana	nucleus	30.35	32.62
VIT_19s0014g03960.t01	Wine grape	nucleus	43.28	29.19
Zm00001d049464_P001	Maize	nucleus	36.82	28.35
Bra023857.1-P	Field mustard	cytosol	16.92	27.64
Zm00001d024213_P001	Maize	nucleus	35.32	27.31
EES14650	Sorghum	nucleus	36.82	27.31
GSMUA_Achr11P...	Banana	nucleus	29.85	27.03
Bra039558.1-P	Field mustard	cytosol	12.44	25.77
Os08t0178800-01	Rice	nucleus	35.32	25.27
GSMUA_Achr5P26340_001	Banana	nucleus	37.81	21.17
Bra031255.1-P	Field mustard	cytosol	18.41	16.74
Bra001815.1-P	Field mustard	cytosol	18.91	16.52

Protein Annotations

EnsemblPlants:Bra022722.1	EnsemblPlants:Bra022722.1-P	EnsemblPlantsGene:Bra022722	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	ncoils:Coil
PANTHER:PTHR31717	PANTHER:PTHR31717:SF26	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336
UniParc:UPI000254685D	UniProt:M4E1S2	MapMan:35.2	:	:	:

Description

AT5G54470 (E=5e-040) | zinc finger (B-box type) family protein

Coordinates

chrA02:+:7797195..7797903

Molecular Weight (calculated)

22055.2 Da

IEP (calculated)

4.121

GRAVY (calculated)

-0.756

Length

201 amino acids

Sequence
(BLAST)

001: MEKMKCELCE GVARMFCESD QASLCWDCDG NVHGANFLVA KHARCLLCSA CQSPTPWKAS GLRLCPTVSI CESCLARKNN SGAGSNSYGE DDGAESYDED
101: EEEEEESDDE EEEEEEAENQ VVPCDAAAAV QESPVMSSSS SVSSGEERFS LVAKRTRQDS ELNSDDEESN DESRPLKRLT RDATLPRSAA MMKSTLKIKR
201: L

Best Arabidopsis Sequence Match ( AT5G54470.1 )
(BLAST)

001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY

Arabidopsis Description

BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.