Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28768 | Canola | cytosol, nucleus, plastid | 42.33 | 66.42 |
| CDY42453 | Canola | cytosol | 46.05 | 54.7 |
| CDY18333 | Canola | nucleus | 45.12 | 53.89 |
| Bra002986.1-P | Field mustard | cytosol | 45.12 | 53.3 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 47.44 | 50.75 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 44.19 | 42.6 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 36.28 | 37.5 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 31.16 | 35.83 |
| Os08t0178800-01 | Rice | nucleus | 38.14 | 29.18 |
| Zm00001d049464_P001 | Maize | nucleus | 35.35 | 29.12 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 39.07 | 28.19 |
| EES14650 | Sorghum | nucleus | 33.95 | 26.94 |
| Zm00001d024213_P001 | Maize | nucleus | 32.56 | 26.92 |
| GSMUA_Achr11P... | Banana | nucleus | 26.51 | 25.68 |
| AT3G21890.1 | Thale cress | cytosol | 14.42 | 25.62 |
| AT4G15248.1 | Thale cress | cytosol | 12.56 | 23.08 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 34.42 | 20.61 |
| AT3G21150.1 | Thale cress | cytosol | 16.74 | 16.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835535 | UniProt:A0A178UJV0 | ProteinID:AED96499.1 | EMBL:AK221519 | ArrayExpress:AT5G54470 |
| EnsemblPlantsGene:AT5G54470 | RefSeq:AT5G54470 | TAIR:AT5G54470 | RefSeq:AT5G54470-TAIR-G | EnsemblPlants:AT5G54470.1 | TAIR:AT5G54470.1 |
| Unigene:At.43303 | EMBL:BT012358 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009555 | GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR000315 | RefSeq:NP_200258.2 | ProteinID:OAO93885.1 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | UniProt:Q6NLH4 | SMART:SM00336 | UniParc:UPI000034F303 | InterPro:Znf_B-box | SEG:seg |
Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
Coordinates
chr5:-:22114304..22115539
Molecular Weight (calculated)
23478.2 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.631
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.