Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P07440_001 | Banana | nucleus | 24.79 | 47.59 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 18.11 | 47.45 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 22.01 | 45.66 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 26.18 | 45.19 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 22.01 | 44.63 |
| Solyc10g006750.2.1 | Tomato | nucleus | 12.26 | 42.31 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 17.27 | 40.79 |
| CDY18333 | Canola | nucleus | 20.33 | 40.56 |
| Bra019058.1-P | Field mustard | cytosol | 23.12 | 40.49 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 17.27 | 40.26 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 24.79 | 39.91 |
| CDY42453 | Canola | cytosol | 20.06 | 39.78 |
| Bra002986.1-P | Field mustard | cytosol | 20.06 | 39.56 |
| PGSC0003DMT400057529 | Potato | nucleus | 20.61 | 38.95 |
| Solyc02g079430.2.1 | Tomato | nucleus | 20.06 | 38.92 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 22.28 | 38.84 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 21.45 | 38.12 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 21.17 | 37.81 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 25.35 | 37.76 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 22.28 | 37.74 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 22.56 | 37.67 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 23.68 | 36.96 |
| KRH22488 | Soybean | nucleus | 22.01 | 35.75 |
| KRH26865 | Soybean | nucleus | 21.73 | 35.29 |
| GSMUA_Achr11P... | Banana | nucleus | 21.73 | 35.14 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 25.07 | 35.02 |
| AT5G54470.1 | Thale cress | cytosol | 20.61 | 34.42 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 13.93 | 34.01 |
| PGSC0003DMT400067337 | Potato | nucleus | 24.23 | 33.85 |
| Os08t0178800-01 | Rice | nucleus | 24.79 | 31.67 |
| Zm00001d024213_P001 | Maize | nucleus | 22.84 | 31.54 |
| KRH55436 | Soybean | nucleus | 18.94 | 31.48 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 26.18 | 31.44 |
| Zm00001d049464_P001 | Maize | nucleus | 22.84 | 31.42 |
| PGSC0003DMT400064406 | Potato | nucleus | 19.78 | 30.6 |
| EES14650 | Sorghum | nucleus | 22.56 | 29.89 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 23.68 | 28.52 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 13.37 | 21.43 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 13.93 | 20.41 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 12.53 | 18.83 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 12.81 | 15.59 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P26340_001 | EnsemblPlants:GSMUA_Achr5T26340_001 | EnsemblPlantsGene:GSMUA_Achr5G26340_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | ncoils:Coil |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | SEG:seg | SMART:SM00336 | UniParc:UPI000295A604 | UniProt:M0T1V9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G26340_001]
Coordinates
chr5:-:27185572..27188275
Molecular Weight (calculated)
39539.5 Da
IEP (calculated)
4.263
GRAVY (calculated)
-0.713
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVRQCELCD RAARIHCESD QASLCWECDA KVHGANFLVA RHSRCLLCRS CQSPTQWRAE GARLGLTVSV CERCAATASA RGRKEGGGGG EEVEEEQGEG
101: GGREEDEEDE EEEEEEEEDD DDEGEGEEED EGDNQVVPWS LTPPPVTSSS SSEGEEESGR MGNGGGLKRM RENADLAVSQ DDLACSSSRP RYLASAPAPS
201: PASAEDEASS FAPAVRPTMD RKRPALLRPA VGLMTPFLSS SDPNRYKNLQ ATYSESFPNI SPIKNVLVKN TWQWIWFSGP SYGSSLTESE SPPPYSKKPI
301: IIIFNNENDV RSSMSIVSRQ EIDLQAFVCP QTNHLLHADM QPSFFMLQMM DLPSGFKWR
101: GGREEDEEDE EEEEEEEEDD DDEGEGEEED EGDNQVVPWS LTPPPVTSSS SSEGEEESGR MGNGGGLKRM RENADLAVSQ DDLACSSSRP RYLASAPAPS
201: PASAEDEASS FAPAVRPTMD RKRPALLRPA VGLMTPFLSS SDPNRYKNLQ ATYSESFPNI SPIKNVLVKN TWQWIWFSGP SYGSSLTESE SPPPYSKKPI
301: IIIFNNENDV RSSMSIVSRQ EIDLQAFVCP QTNHLLHADM QPSFFMLQMM DLPSGFKWR
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.