Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 87.13 | 85.44 |
| Solyc10g006750.2.1 | Tomato | nucleus | 23.76 | 46.15 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 36.14 | 42.2 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 35.15 | 40.11 |
| Solyc02g079430.2.1 | Tomato | nucleus | 35.15 | 38.38 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 46.53 | 36.58 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 33.66 | 36.36 |
| KRH22488 | Soybean | nucleus | 34.65 | 31.67 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 32.18 | 31.25 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 45.05 | 30.43 |
| KRH26865 | Soybean | nucleus | 33.17 | 30.32 |
| Zm00001d049464_P001 | Maize | nucleus | 32.18 | 24.9 |
| Zm00001d024213_P001 | Maize | nucleus | 31.19 | 24.23 |
| Solyc12g005750.1.1 | Tomato | cytosol | 12.87 | 23.85 |
| GSMUA_Achr11P... | Banana | nucleus | 25.74 | 23.42 |
| EES14650 | Sorghum | nucleus | 30.69 | 22.88 |
| Os08t0178800-01 | Rice | nucleus | 31.19 | 22.42 |
| Solyc07g052620.1.1 | Tomato | nucleus | 14.36 | 22.31 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 38.12 | 21.45 |
| Solyc06g063280.1.1 | Tomato | nucleus | 22.28 | 17.24 |
Protein Annotations
| EMBL:GQ261262 | EnsemblPlants:Solyc12g005660.1.1 | EnsemblPlantsGene:Solyc12g005660.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | ncoils:Coil |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 |
| UniParc:UPI000243C653 | UniProt:G8Z284 | MapMan:35.2 | : | : | : |
Description
Hop-interacting protein THI121 [Source:UniProtKB/TrEMBL;Acc:G8Z284]
Coordinates
chr12:-:351057..351746
Molecular Weight (calculated)
22269.9 Da
IEP (calculated)
4.630
GRAVY (calculated)
-0.552
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNCELCNGL ARIYCESDHA NLCWDCDLKV HSANFLVAKH SRSLLCNVCR SPTVWSASGA KIGRTVSVCE RCVNDEETDR EEEEKEEIDL EDIQVVPWSS
101: TPPPQPESSS SSSDESLTDF FSLKRMRKDD DSGTLTSHRE VNMLSPATED HGGDEAAEFV KSFPVKMPSK IQRTGEILSG RVENIGCSAT VELIGRINRG
201: GG
101: TPPPQPESSS SSSDESLTDF FSLKRMRKDD DSGTLTSHRE VNMLSPATED HGGDEAAEFV KSFPVKMPSK IQRTGEILSG RVENIGCSAT VELIGRINRG
201: GG
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.