Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 85.44 | 87.13 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 34.95 | 41.62 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 34.47 | 40.11 |
| PGSC0003DMT400067337 | Potato | nucleus | 47.57 | 38.13 |
| PGSC0003DMT400057529 | Potato | nucleus | 34.47 | 37.37 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 33.01 | 36.36 |
| KRH22488 | Soybean | nucleus | 35.44 | 33.03 |
| KRH26865 | Soybean | nucleus | 33.98 | 31.67 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 31.55 | 31.25 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 42.72 | 29.43 |
| PGSC0003DMT400064406 | Potato | nucleus | 33.01 | 29.31 |
| PGSC0003DMT400034275 | Potato | cytosol | 13.59 | 25.0 |
| GSMUA_Achr11P... | Banana | nucleus | 26.7 | 24.77 |
| Zm00001d049464_P001 | Maize | nucleus | 31.07 | 24.52 |
| EES14650 | Sorghum | nucleus | 30.58 | 23.25 |
| Os08t0178800-01 | Rice | nucleus | 31.07 | 22.78 |
| Zm00001d024213_P001 | Maize | nucleus | 28.64 | 22.69 |
| PGSC0003DMT400067296 | Potato | nucleus | 14.08 | 22.31 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 38.84 | 22.28 |
| PGSC0003DMT400068177 | Potato | nucleus | 21.36 | 16.79 |
Protein Annotations
| EntrezGene:102585275 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | EMBL:KX576537 | UniProt:M1B2S5 |
| PFAM:PF00643 | EnsemblPlantsGene:PGSC0003DMG400013753 | PGSC:PGSC0003DMG400013753 | EnsemblPlants:PGSC0003DMT400035751 | PFscan:PS50119 | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | SMART:SM00336 | UniParc:UPI00029541E3 | RefSeq:XP_006351949.1 | InterPro:Znf_B-box | SEG:seg |
Description
COL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013753]
Coordinates
chr12:+:6868785..6869802
Molecular Weight (calculated)
22789.4 Da
IEP (calculated)
4.334
GRAVY (calculated)
-0.624
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNCELCNGL ARIYCESDHA NLCWDCDLKV HSANFLVAKH SRSLLCNVCQ SPTVWSATGA KIGRTVSVCE RCVNDEETDR EEEEEEEEEE IDLEDIQVVP
101: WSSTPPPQPA SSSSSSDESL TPIFSLKRMR DDDDSGTSTS HREVNMLSPA AKDHGGDEPA EFVKSFSMRM SSKIQRTGEI LPGRVENIGC SATMELIGRI
201: NRGEDS
101: WSSTPPPQPA SSSSSSDESL TPIFSLKRMR DDDDSGTSTS HREVNMLSPA AKDHGGDEPA EFVKSFSMRM SSKIQRTGEI LPGRVENIGC SATMELIGRI
201: NRGEDS
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.