Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g079430.2.1 | Tomato | nucleus | 64.74 | 66.49 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 37.37 | 40.11 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 34.74 | 38.15 |
| KRH26865 | Soybean | nucleus | 42.63 | 36.65 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 37.37 | 34.47 |
| KRH22488 | Soybean | nucleus | 40.0 | 34.39 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 37.37 | 34.13 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 31.58 | 32.09 |
| PGSC0003DMT400064406 | Potato | nucleus | 37.89 | 31.03 |
| PGSC0003DMT400067337 | Potato | nucleus | 40.53 | 29.96 |
| PGSC0003DMT400034275 | Potato | cytosol | 16.84 | 28.57 |
| EES14650 | Sorghum | nucleus | 37.89 | 26.57 |
| Zm00001d049464_P001 | Maize | nucleus | 36.32 | 26.44 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 41.05 | 26.09 |
| GSMUA_Achr11P... | Banana | nucleus | 29.47 | 25.23 |
| PGSC0003DMT400067296 | Potato | nucleus | 16.84 | 24.62 |
| Zm00001d024213_P001 | Maize | nucleus | 33.68 | 24.62 |
| Os08t0178800-01 | Rice | nucleus | 33.16 | 22.42 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 38.95 | 20.61 |
| PGSC0003DMT400068177 | Potato | nucleus | 25.26 | 18.32 |
Protein Annotations
| EMBL:KX576538 | EnsemblPlants:PGSC0003DMT400057529 | EnsemblPlantsGene:PGSC0003DMG400022345 | EntrezGene:102603949 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | PFAM:PF00643 | PFscan:PS50119 | PGSC:PGSC0003DMG400022345 | RefSeq:XP_006347164.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0002954A55 | UniProt:M1C188 | MapMan:35.2 | : |
Description
COL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022345]
Coordinates
chr2:-:35131445..35132521
Molecular Weight (calculated)
21301.6 Da
IEP (calculated)
4.244
GRAVY (calculated)
-1.117
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKCELCSSI ARVYCESDQA SLCWDCDARV HTANFLVAKH SRILLCNSCQ SLTPWSGSGS KLGPTVSVCQ KCFHRNNNDG EDQDLNDHNN DDTEGEDDDE
101: DDDDEEEDED DGSSDGDNQV VPLSSSTTDQ PNPPSLTSSS SSSEDSTSRF HRRSVIGFSP NRTEENIQSH YCGITRPEEK VERRSSWRWR
101: DDDDEEEDED DGSSDGDNQV VPLSSSTTDQ PNPPSLTSSS SSSEDSTSRF HRRSVIGFSP NRTEENIQSH YCGITRPEEK VERRSSWRWR
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.