CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26865	Soybean	nucleus	80.09	80.09
KRH56068	Soybean	cytosol, nucleus, plastid	37.56	46.89
KRH25450	Soybean	cytosol, nucleus, plastid	36.65	46.82
KRH21598	Soybean	cytosol, nucleus, plastid	31.22	44.81
KRH10724	Soybean	cytosol, nucleus, plastid	29.86	43.42
PGSC0003DMT400057529	Potato	nucleus	34.39	40.0
Solyc02g079430.2.1	Tomato	nucleus	33.48	40.0
GSMUA_Achr8P07440_001	Banana	nucleus	32.58	38.5
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	36.2	38.46
PGSC0003DMT400035751	Potato	cytosol, nucleus, plastid	33.03	35.44
Solyc12g005660.1.1	Tomato	cytosol, nucleus, plastid	31.67	34.65
VIT_12s0134g00400.t01	Wine grape	nucleus	44.8	33.11
KRH55436	Soybean	nucleus	29.41	30.09
PGSC0003DMT400067337	Potato	nucleus	34.39	29.57
Solyc07g053140.2.1	Tomato	cytosol, nucleus, plastid	33.94	29.18
Zm00001d049464_P001	Maize	nucleus	33.94	28.74
Zm00001d024213_P001	Maize	nucleus	33.03	28.08
GSMUA_Achr11P...	Banana	nucleus	27.6	27.48
EES14650	Sorghum	nucleus	32.58	26.57
KRH26836	Soybean	cytosol, nucleus, plastid	14.03	25.0
Os08t0178800-01	Rice	nucleus	31.67	24.91
KRH22520	Soybean	cytosol, nucleus, plastid	13.57	24.19
GSMUA_Achr5P26340_001	Banana	nucleus	35.75	22.01
KRH44613	Soybean	nucleus	22.17	20.33
KRH47291	Soybean	nucleus	20.81	18.93

Protein Annotations

EMBL:ACUP02008415	EnsemblPlants:KRH22488	EnsemblPlantsGene:GLYMA_13G303700	EntrezGene:100801024	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF26	PFAM:PF00643	PFscan:PS50119	ProteinID:KRH22488	ProteinID:KRH22488.1
SEG:seg	SMART:SM00336	UniParc:UPI0001534899	UniProt:I1M3Z6	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr13:-:40079052..40080607

Molecular Weight (calculated)

24256.0 Da

IEP (calculated)

4.038

GRAVY (calculated)

-0.966

Length

221 amino acids

Sequence
(BLAST)

001: MKNCELCKLP ARTFCESDQA SLCWDCDAKV HGANFLVERH TRTLLCHACQ SPTPWKASGA ALGNTVSLCE RCAGGTTEQG QESQGGNDDD IDTDIDTDDE
101: DDYDESEDEV AADEEDGDNQ VVPWSSEPPP PAPSSSSSEE SVSRCNNVDE VSTTLKRRRQ EDNDFQGWNS NNWGCERSEV ERGGWLVRLR RRTADDVAVE
201: QRSARAASPD GCCGDRASED V

Best Arabidopsis Sequence Match ( AT5G54470.1 )
(BLAST)

001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY

Arabidopsis Description

BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.