CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90815
KRG93763
KRH01455
KRH13468
KRH18308
KRH24006
KRH27971
KRH29310
KRH35955
KRH45169
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21150.1	KRG90815	AT1G68520.1	21798944
AT3G21150.1	KRH13468	AT1G68520.1	21798944
AT3G21150.1	KRH35955	AT1G68520.1	21798944
AT3G21150.1	KRH24006	AT3G48150.1	21798944
AT3G21150.1	KRH27971	AT3G48150.1	21798944
AT3G21150.1	KRH29310	AT3G48150.1	21798944
AT3G21150.1	KRH77487	AT3G48150.1	21798944
AT3G21150.1	KRG93763	AT5G15840.1	21798944
AT3G21150.1	KRH01455	AT5G15840.1	21798944
AT3G21150.1	KRH18308	AT5G15840.1	21798944
AT3G21150.1	KRH45169	AT5G15840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44613	Soybean	nucleus	74.49	75.1
PGSC0003DMT400068177	Potato	nucleus	35.8	33.21
KRH26836	Soybean	cytosol, nucleus, plastid	13.58	26.61
KRH22520	Soybean	cytosol, nucleus, plastid	13.58	26.61
KRH10724	Soybean	cytosol, nucleus, plastid	16.05	25.66
KRH25450	Soybean	cytosol, nucleus, plastid	18.11	25.43
GSMUA_Achr9P13880_001	Banana	nucleus	15.23	25.17
KRH21598	Soybean	cytosol, nucleus, plastid	15.64	24.68
KRH56068	Soybean	cytosol, nucleus, plastid	17.7	24.29
Solyc06g063280.1.1	Tomato	nucleus	23.87	22.22
KRH26865	Soybean	nucleus	19.34	21.27
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	22.63	21.15
KRH22488	Soybean	nucleus	18.93	20.81
Bra031255.1-P	Field mustard	cytosol	18.93	20.81
KRH55436	Soybean	nucleus	18.11	20.37
CDY19582	Canola	cytosol	18.52	20.36
CDY32408	Canola	cytosol	18.11	20.0
CDY50075	Canola	nucleus	18.11	19.73
GSMUA_Achr6P03790_001	Banana	nucleus	18.11	19.64
GSMUA_Achr1P10450_001	Banana	cytosol	18.93	19.25
AT3G21150.1	Thale cress	cytosol	17.7	19.11
CDX82214	Canola	cytosol	17.7	18.7
Bra001815.1-P	Field mustard	cytosol	17.7	18.7
GSMUA_Achr7P08700_001	Banana	cytosol	18.11	17.96
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	16.46	13.56

Protein Annotations

EMBL:ACUP02004144	EnsemblPlants:KRH47291	EnsemblPlantsGene:GLYMA_07G020400	EntrezGene:100781783	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF22	PFscan:PS50119	ProteinID:KRH47291	ProteinID:KRH47291.1	SEG:seg
SMART:SM00336	UniParc:UPI0001D63DB4	UniProt:I1KGP6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr7:+:1599490..1600647

Molecular Weight (calculated)

26402.5 Da

IEP (calculated)

10.090

GRAVY (calculated)

-0.184

Length

243 amino acids

Sequence
(BLAST)

001: MKPKTCELCH QLASLYCPSD SAFLCFHCDA AVHAANFLVA RHLRRLLCSK CNRFAAIHIS GAISRHLSST CTSCSLEIPS ADSDSLPSSS TCVSSSESCS
101: TNQIKAEKKR RRRRRSFSSS SVTDDASPAA KKRRRNGGSV AEVFEKWSRE IGLGLGVNGN RVASNALSVC LGKWRSLPFR VAAATSFWLG LRFCGDRGLA
201: TCQNLARLEA ISGVPAKLIL GAHANLARVF THRRELQEGW GES

Best Arabidopsis Sequence Match ( AT3G21150.1 )
(BLAST)

001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV

Arabidopsis Description

BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.