Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006750.2.1 | Tomato | nucleus | 23.61 | 49.04 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 30.09 | 37.57 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 26.39 | 37.01 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 25.93 | 36.84 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 30.09 | 36.72 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 31.02 | 32.21 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 26.39 | 30.48 |
| KRH26865 | Soybean | nucleus | 30.56 | 29.86 |
| KRH22488 | Soybean | nucleus | 30.09 | 29.41 |
| PGSC0003DMT400064406 | Potato | nucleus | 31.48 | 29.31 |
| Zm00001d024213_P001 | Maize | nucleus | 29.63 | 24.62 |
| Zm00001d049464_P001 | Maize | nucleus | 29.63 | 24.52 |
| GSMUA_Achr11P... | Banana | nucleus | 24.54 | 23.87 |
| KRH26836 | Soybean | cytosol, nucleus, plastid | 13.43 | 23.39 |
| KRH22520 | Soybean | cytosol, nucleus, plastid | 13.43 | 23.39 |
| Os08t0178800-01 | Rice | nucleus | 29.63 | 22.78 |
| EES14650 | Sorghum | nucleus | 28.24 | 22.51 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 31.48 | 18.94 |
| KRH47291 | Soybean | nucleus | 20.37 | 18.11 |
| KRH44613 | Soybean | nucleus | 18.98 | 17.01 |
Protein Annotations
| EntrezGene:100818267 | MapMan:35.2 | EMBL:ACUP02004005 | EnsemblPlantsGene:GLYMA_06G255300 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | UniProt:I1KE57 | InterPro:IPR000315 |
| EnsemblPlants:KRH55436 | ProteinID:KRH55436 | ProteinID:KRH55436.1 | PFscan:PS50119 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 |
| SMART:SM00336 | UniParc:UPI0002339E8B | InterPro:Znf_B-box | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:-:43508577..43510665
Molecular Weight (calculated)
24251.5 Da
IEP (calculated)
4.283
GRAVY (calculated)
-0.870
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESSTTCVL CEKRAMMLCD SDQAKLCWEC DEKVHSANFL VAKHSRVLLC RLCHSPTPWK ASGMKLTPTV SFCNRCVAER NARWNRLVNN ENEHQQQQQQ
101: QQQSDFVVDD GREYGSDHVF DDDDGDYSDD SGEEEEEDED DEEENENQVV PMSSGSATSP PKVACLALKR LRNNSFSVDS SHDETACSSS EMLSSTLPSG
201: DESTSLSSVL KRHRVD
101: QQQSDFVVDD GREYGSDHVF DDDDGDYSDD SGEEEEEDED DEEENENQVV PMSSGSATSP PKVACLALKR LRNNSFSVDS SHDETACSSS EMLSSTLPSG
201: DESTSLSSVL KRHRVD
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.