Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006750.2.1 | Tomato | nucleus | 29.31 | 65.38 |
| PGSC0003DMT400057529 | Potato | nucleus | 31.03 | 37.89 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 31.47 | 35.1 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 29.31 | 33.01 |
| KRH55436 | Soybean | nucleus | 29.31 | 31.48 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 24.14 | 29.95 |
| GSMUA_Achr11P... | Banana | nucleus | 25.86 | 27.03 |
| PGSC0003DMT400067337 | Potato | nucleus | 28.88 | 26.07 |
| PGSC0003DMT400034275 | Potato | cytosol | 12.07 | 25.0 |
| Zm00001d024213_P001 | Maize | nucleus | 27.59 | 24.62 |
| EES14650 | Sorghum | nucleus | 27.16 | 23.25 |
| Zm00001d049464_P001 | Maize | nucleus | 25.86 | 22.99 |
| Os08t0178800-01 | Rice | nucleus | 27.16 | 22.42 |
| PGSC0003DMT400067296 | Potato | nucleus | 12.07 | 21.54 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 30.6 | 19.78 |
| PGSC0003DMT400068177 | Potato | nucleus | 20.69 | 18.32 |
Protein Annotations
| EMBL:KX576536 | EnsemblPlants:PGSC0003DMT400064406 | EnsemblPlantsGene:PGSC0003DMG400025024 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | PFAM:PF00643 | PFscan:PS50119 | PGSC:PGSC0003DMG400025024 | SEG:seg | SMART:SM00336 |
| UniParc:UPI0002961D6E | UniProt:M1CCB3 | MapMan:35.2 | : | : | : |
Description
COL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400025024]
Coordinates
chr10:-:1673524..1675193
Molecular Weight (calculated)
25362.6 Da
IEP (calculated)
3.939
GRAVY (calculated)
-0.751
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCELCDKNK SMMYCESDQA RLCWDCDSKV HSANFLVAKH SRNLLCHSCQ NSTPWTASGP KLSPTFSVCN SCLENPNTAA VRLQDPIEEI GERIEENYQT
101: ETDNDEDEDE YGSTDSEIDD DDEDEDEEDG NQVVPLSSSP LSNFSPPSPV RSVSSSGSYG DLSAAGDSGG GGGATVAVNS SPWKRVRESD CLHFEDEEAY
201: SSSLLLEENK GTTSSIGFLR PMKVLRTNEL CD
101: ETDNDEDEDE YGSTDSEIDD DDEDEDEEDG NQVVPLSSSP LSNFSPPSPV RSVSSSGSYG DLSAAGDSGG GGGATVAVNS SPWKRVRESD CLHFEDEEAY
201: SSSLLLEENK GTTSSIGFLR PMKVLRTNEL CD
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.