Factsheet for PGSC0003DMT400068177

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020030
PGSC0003DMT400026065
PGSC0003DMT400026068
PGSC0003DMT400037755
PGSC0003DMT400063189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21150.1	PGSC0003DMT400020030	AT1G68520.1	21798944
AT3G21150.1	PGSC0003DMT400037755	AT1G68520.1	21798944
AT3G21150.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT3G21150.1	PGSC0003DMT400026065	AT5G15840.1	21798944
AT3G21150.1	PGSC0003DMT400026068	AT5G15840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063280.1.1	Tomato	nucleus	36.26	36.4
KRH47291	Soybean	nucleus	33.21	35.8
KRH44613	Soybean	nucleus	32.44	35.27
PGSC0003DMT400034275	Potato	cytosol	11.83	27.68
GSMUA_Achr9P13880_001	Banana	nucleus	14.89	26.53
PGSC0003DMT400057529	Potato	nucleus	18.32	25.26
GSMUA_Achr1P10450_001	Banana	cytosol	22.14	24.27
Bra031255.1-P	Field mustard	cytosol	20.23	23.98
CDY19582	Canola	cytosol	20.23	23.98
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	23.66	23.85
PGSC0003DMT400067296	Potato	nucleus	11.83	23.85
CDY50075	Canola	nucleus	19.85	23.32
AT3G21150.1	Thale cress	cytosol	19.85	23.11
CDY32408	Canola	cytosol	19.08	22.73
Bra001815.1-P	Field mustard	cytosol	19.47	22.17
CDX82214	Canola	cytosol	19.47	22.17
GSMUA_Achr7P08700_001	Banana	cytosol	20.61	22.04
PGSC0003DMT400035751	Potato	cytosol, nucleus, plastid	16.79	21.36
PGSC0003DMT400064406	Potato	nucleus	18.32	20.69
GSMUA_Achr6P03790_001	Banana	nucleus	17.56	20.54
PGSC0003DMT400067337	Potato	nucleus	18.7	19.07
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	20.99	18.64

Protein Annotations

EMBL:KX576534	EnsemblPlants:PGSC0003DMT400068177	EnsemblPlantsGene:PGSC0003DMG400026515	EntrezGene:102580785	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF22	PFscan:PS50119	PGSC:PGSC0003DMG400026515	RefSeq:XP_006357444.1	SEG:seg
SMART:SM00336	UniParc:UPI000295C9D8	UniProt:M1CIK5	MapMan:35.1	:	:

Description

COL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026515]

Coordinates

chr6:-:48085593..48086615

Molecular Weight (calculated)

28990.7 Da

IEP (calculated)

9.255

GRAVY (calculated)

-0.265

Length

262 amino acids

Sequence
(BLAST)

001: MEVMSSKLCE LCNDQAALFC PSDSAFLCFH CDAKVHQANF LVARHLRLTL CSHCNSLTKN RFSPCSPRRP ALCPSCSRNS SADSDLRSLS SSSSSTCVSS
101: TQSSAVTQKI NISFSNRKQF PEYSTNDSIG EVNSGSSNLV RSRSAKLRDP RAATCVFMHW CTKLGMNGEE RVVQTACSVL AICFGRFRGL PLRVALAACF
201: WLGLKNIEEK SKSTWQSLKK LEEISGVPAK IILATELKLR KIVKTNNRRR QGMEESWAES ST

Best Arabidopsis Sequence Match ( AT3G21150.1 )
(BLAST)

001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV

Arabidopsis Description

BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.