Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P13880_001 | Banana | nucleus | 27.23 | 41.5 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 33.04 | 30.2 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 29.46 | 27.62 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 32.14 | 24.41 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 20.09 | 21.63 |
| KRH44613 | Soybean | nucleus | 22.77 | 21.16 |
| CDY32408 | Canola | cytosol | 20.54 | 20.91 |
| AT3G21150.1 | Thale cress | cytosol | 20.98 | 20.89 |
| Bra001815.1-P | Field mustard | cytosol | 20.98 | 20.43 |
| CDX82214 | Canola | cytosol | 20.98 | 20.43 |
| Solyc06g063280.1.1 | Tomato | nucleus | 23.66 | 20.31 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 16.07 | 19.25 |
| Bra031255.1-P | Field mustard | cytosol | 18.3 | 18.55 |
| KRH47291 | Soybean | nucleus | 19.64 | 18.11 |
| CDY19582 | Canola | cytosol | 17.86 | 18.1 |
| GSMUA_Achr11P... | Banana | nucleus | 17.86 | 18.02 |
| CDY50075 | Canola | nucleus | 17.86 | 17.94 |
| VIT_09s0054g00530.t01 | Wine grape | cytosol, nucleus, plastid | 20.54 | 17.69 |
| PGSC0003DMT400068177 | Potato | nucleus | 20.54 | 17.56 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 21.43 | 13.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P03790_001 | EnsemblPlants:GSMUA_Achr6T03790_001 | EnsemblPlantsGene:GSMUA_Achr6G03790_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF22 | SEG:seg | SMART:SM00336 | UniParc:UPI00029570F2 | UniProt:M0T3X7 | MapMan:35.2 |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G03790_001]
Coordinates
chr6:+:2597840..2599426
Molecular Weight (calculated)
23228.8 Da
IEP (calculated)
9.865
GRAVY (calculated)
-0.078
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAARWRGCE LCGGAAAVHC EADAAFLCWA CDARVHGANF LVARHLRRVA CAGCGALDED RLLAGAGSPP VRSLCSACGP AGSGFSDDSE SVSCISTAES
101: IAAASAGRRG QASAEGVLAR RGGRAGLGRR RVAEAVPAAV GRLRRACRGT AETRSRVSLE AAPWLAARRR GWRGGGTREE AMLRSSRAAS GVPVELIVRA
201: STRLAGAAMR ARAMAMEEGW AECY
101: IAAASAGRRG QASAEGVLAR RGGRAGLGRR RVAEAVPAAV GRLRRACRGT AETRSRVSLE AAPWLAARRR GWRGGGTREE AMLRSSRAAS GVPVELIVRA
201: STRLAGAAMR ARAMAMEEGW AECY
001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
Arabidopsis Description
BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.