Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 64.85 | 52.54 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 49.37 | 48.16 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 22.59 | 36.73 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 27.62 | 29.46 |
| Solyc06g063280.1.1 | Tomato | nucleus | 28.45 | 26.05 |
| Bra031255.1-P | Field mustard | cytosol | 22.18 | 23.98 |
| CDY19582 | Canola | cytosol | 22.18 | 23.98 |
| VIT_09s0054g00530.t01 | Wine grape | cytosol, nucleus, plastid | 24.69 | 22.69 |
| AT3G21150.1 | Thale cress | cytosol | 21.34 | 22.67 |
| CDY32408 | Canola | cytosol | 20.5 | 22.27 |
| PGSC0003DMT400068177 | Potato | nucleus | 24.27 | 22.14 |
| CDY50075 | Canola | nucleus | 20.5 | 21.97 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 15.9 | 20.32 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 17.57 | 20.19 |
| CDX82214 | Canola | cytosol | 18.83 | 19.57 |
| Bra001815.1-P | Field mustard | cytosol | 18.83 | 19.57 |
| KRH44613 | Soybean | nucleus | 19.67 | 19.5 |
| KRH47291 | Soybean | nucleus | 19.25 | 18.93 |
| GSMUA_Achr11P... | Banana | nucleus | 15.9 | 17.12 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 18.83 | 12.53 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P10450_001 | EnsemblPlants:GSMUA_Achr1T10450_001 | EnsemblPlantsGene:GSMUA_Achr1G10450_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF22 | SEG:seg | SMART:SM00336 | UniParc:UPI000295C9C3 | UniProt:M0RYQ4 | MapMan:35.2 |
Description
B-box zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G10450_001]
Coordinates
chr1:+:7878306..7879025
Molecular Weight (calculated)
25296.3 Da
IEP (calculated)
8.601
GRAVY (calculated)
-0.062
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQRPPCELC GCEAVVFCDP DAAFLCWACD ASVHGANFLV ARHVRLVACP ACDSLDAARR VSGAAPCRVR DFCASCDPDS VSPPSPSRSA GSSSSSSCLS
101: TSESTAARRG VKTAAPRRTA ARRQRGGADE RVEGVLLGWS RRMGLRNQRR CVEAAARVVG ACQRATSALP LRVALSAALW FAIKLCEDEA VPEKGGAAAL
201: RRLEACSGVP ARLILAVESR IARLAERARV AEEGWAECP
101: TSESTAARRG VKTAAPRRTA ARRQRGGADE RVEGVLLGWS RRMGLRNQRR CVEAAARVVG ACQRATSALP LRVALSAALW FAIKLCEDEA VPEKGGAAAL
201: RRLEACSGVP ARLILAVESR IARLAERARV AEEGWAECP
001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
Arabidopsis Description
BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.