Factsheet for Solyc06g063280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g089500.2.1
Solyc03g113740.2.1
Solyc04g007210.2.1
Solyc05g009310.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21150.1	Solyc04g007210.2.1	AT1G68520.1	21798944
AT3G21150.1	Solyc05g009310.2.1	AT1G68520.1	21798944
AT3G21150.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT3G21150.1	Solyc02g089500.2.1	AT5G15840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006750.2.1	Tomato	nucleus	14.56	36.54
PGSC0003DMT400068177	Potato	nucleus	36.4	36.26
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	31.03	31.15
GSMUA_Achr1P10450_001	Banana	cytosol	26.05	28.45
Solyc12g005750.1.1	Tomato	cytosol	11.88	28.44
GSMUA_Achr9P13880_001	Banana	nucleus	15.71	27.89
AT3G21150.1	Thale cress	cytosol	22.99	26.67
Bra031255.1-P	Field mustard	cytosol	22.22	26.24
CDY19582	Canola	cytosol	21.84	25.79
CDY32408	Canola	cytosol	21.46	25.45
GSMUA_Achr7P08700_001	Banana	cytosol	23.75	25.31
CDY50075	Canola	nucleus	21.07	24.66
Bra001815.1-P	Field mustard	cytosol	21.07	23.91
CDX82214	Canola	cytosol	21.07	23.91
KRH47291	Soybean	nucleus	22.22	23.87
GSMUA_Achr6P03790_001	Banana	nucleus	20.31	23.66
Solyc07g052620.1.1	Tomato	nucleus	11.49	23.08
KRH44613	Soybean	nucleus	21.07	22.82
Solyc12g005660.1.1	Tomato	cytosol, nucleus, plastid	17.24	22.28
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	23.37	20.68
Solyc02g079430.2.1	Tomato	nucleus	14.56	20.54
Solyc07g053140.2.1	Tomato	cytosol, nucleus, plastid	16.48	16.73

Protein Annotations

EnsemblPlants:Solyc06g063280.1.1	EnsemblPlantsGene:Solyc06g063280.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF22
PFscan:PS50119	SEG:seg	SMART:SM00336	UniParc:UPI0001D63DBA	UniProt:K4C759	MapMan:35.2

Description

No Description!

Coordinates

chr6:+:39983361..39984146

Molecular Weight (calculated)

28719.5 Da

IEP (calculated)

8.898

GRAVY (calculated)

-0.268

Length

261 amino acids

Sequence
(BLAST)

001: MELLSSKLCE LCNDQAALFC PSDSAFLCFH CDAKVHQANF LVARHLRLTL CSHCNSLTKK RFSPCSPPPP ALCPSCSRNS SGDSDLRSVS TTSSSSSSTC
101: VSSTQSSAIT QKINIISSNR KQFPDSDSNG EVNSGRCNLV RSRSVKLRDP RAATCVFMHW CTKLQMNREE RVVQTACSVL GICFSRFRGL PLRVALAACF
201: WFGLKTTEDK SKTSQSLKKL EEISGVPAKI ILATELKLRK IMKTNHGQPQ AMEESWAESS P

Best Arabidopsis Sequence Match ( AT3G21150.1 )
(BLAST)

001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV

Arabidopsis Description

BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.