CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69494
CDX79176
CDX81527
CDX91876
CDY04230
CDY04231
CDY07174
CDY26469
CDY36901
CDY44890
CDY44976
CDY48504
CDY58069
CDY58070
CDY67475
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21150.1	CDX81527	AT1G68520.1	21798944
AT3G21150.1	CDY04230	AT1G68520.1	21798944
AT3G21150.1	CDY04231	AT1G68520.1	21798944
AT3G21150.1	CDY44890	AT1G68520.1	21798944
AT3G21150.1	CDY36901	AT3G48150.1	21798944
AT3G21150.1	CDY44976	AT3G48150.1	21798944
AT3G21150.1	CDY58069	AT3G48150.1	21798944
AT3G21150.1	CDY58070	AT3G48150.1	21798944
AT3G21150.1	CDY70805	AT3G48150.1	21798944
AT3G21150.1	CDX79176	AT4G01090.1	21798944
AT3G21150.1	CDX91876	AT4G01090.1	21798944
AT3G21150.1	CDY07174	AT4G01090.1	21798944
AT3G21150.1	CDY48504	AT4G01090.1	21798944
AT3G21150.1	CDY67475	AT4G01090.1	21798944
AT3G21150.1	CDX69494	AT5G15840.1	21798944
AT3G21150.1	CDY26469	AT5G15840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19582	Canola	cytosol	81.17	81.9
Bra031255.1-P	Field mustard	cytosol	80.27	81.0
CDY32408	Canola	cytosol	66.82	67.73
AT3G21150.1	Thale cress	cytosol	67.71	67.11
CDX82214	Canola	cytosol	65.47	63.48
CDY57233	Canola	cytosol	13.0	29.9
CDY22930	Canola	cytosol	13.0	29.9
CDY64254	Canola	cytosol	14.35	28.57
GSMUA_Achr9P13880_001	Banana	nucleus	17.04	25.85
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	29.6	25.38
CDY55658	Canola	cytosol	13.9	25.2
CDX71395	Canola	cytosol	13.9	25.2
CDY28768	Canola	cytosol, nucleus, plastid	15.25	24.82
CDY33149	Canola	cytosol, nucleus, plastid	13.45	24.0
Solyc06g063280.1.1	Tomato	nucleus	24.66	21.07
CDY18333	Canola	nucleus	16.59	20.56
GSMUA_Achr1P10450_001	Banana	cytosol	21.97	20.5
GSMUA_Achr7P08700_001	Banana	cytosol	21.97	20.0
PGSC0003DMT400068177	Potato	nucleus	23.32	19.85
CDY42453	Canola	cytosol	15.25	18.78
KRH47291	Soybean	nucleus	19.73	18.11
GSMUA_Achr6P03790_001	Banana	nucleus	17.94	17.86
KRH44613	Soybean	nucleus	18.39	17.01
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	20.63	15.59

Protein Annotations

EnsemblPlants:CDY50075	EnsemblPlantsGene:GSBRNA2T00095849001	GO:A0A078IGQ9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31717
PANTHER:PTHR31717:SF22	ProteinID:CDY50075	ProteinID:CDY50075.1	SEG:seg	SMART:SM00336	UniParc:UPI0004EEDE40
UniProt:A0A078IGQ9	MapMan:35.1	:	:	:	:

Description

BnaC05g30840DBnaC05g30840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGQ9]

Coordinates

chrLK032878:+:80463..81134

Molecular Weight (calculated)

23809.7 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.061

Length

223 amino acids

Sequence
(BLAST)

001: MVKSCELCGA EADLHCAADS AFLCRSCDAK FHASNILFSR HVRRTICPCC KSLTGDSFSG PLSPSPRTTA CCCGSSSESS CCSSLDRVSS SELSSTKTSR
101: AVVNKARGRE KRVMAAADGV LVKWCDELGL NGDLRNAVVS LASLALAVEK PTKVILAAAF WFGVRNSPKK VMRPSLKKVA DVSGVAAGMI RAVESKLARA
201: VTLQLKRWRV DSEEGWGENE NGM

Best Arabidopsis Sequence Match ( AT3G21150.1 )
(BLAST)

001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV

Arabidopsis Description

BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.