Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68520.1 | CDY24507 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY30923 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY69854 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY70563 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07382 | Canola | nucleus | 93.18 | 93.18 |
| KRH13468 | Soybean | cytosol | 54.55 | 24.24 |
| CDY65591 | Canola | nucleus | 81.82 | 10.34 |
| CDY67920 | Canola | nucleus | 81.82 | 10.34 |
| AT1G68520.1 | Thale cress | nucleus | 88.64 | 9.61 |
| CDY03851 | Canola | nucleus | 79.55 | 9.41 |
| CDY51133 | Canola | nucleus | 79.55 | 9.28 |
| CDY44890 | Canola | nucleus | 84.09 | 9.23 |
| CDY53119 | Canola | nucleus | 77.27 | 9.04 |
| CDX81527 | Canola | nucleus | 81.82 | 8.98 |
| Bra004035.1-P | Field mustard | nucleus | 93.18 | 8.65 |
| CDY24402 | Canola | nucleus | 68.18 | 8.13 |
| KRG90815 | Soybean | nucleus | 75.0 | 7.89 |
| Solyc04g007210.2.1 | Tomato | nucleus | 75.0 | 7.71 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 65.91 | 7.65 |
| KRH35955 | Soybean | nucleus | 72.73 | 7.64 |
| GSMUA_Achr10P... | Banana | nucleus | 65.91 | 7.59 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 56.82 | 7.51 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 72.73 | 7.41 |
| GSMUA_Achr10P... | Banana | nucleus | 59.09 | 7.41 |
| CDY36106 | Canola | nucleus | 63.64 | 7.29 |
| Solyc05g009310.2.1 | Tomato | nucleus | 70.45 | 7.09 |
| PGSC0003DMT400037755 | Potato | nucleus | 70.45 | 6.94 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 56.82 | 6.81 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 63.64 | 6.57 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 63.64 | 6.45 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 65.91 | 6.42 |
| Os02t0731700-02 | Rice | nucleus | 65.91 | 6.42 |
| CDY66242 | Canola | nucleus | 45.45 | 6.37 |
| Zm00001d045661_P001 | Maize | nucleus | 65.91 | 6.36 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 61.36 | 6.31 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 61.36 | 6.25 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 61.36 | 6.25 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 61.36 | 6.25 |
| Zm00001d017939_P001 | Maize | nucleus | 65.91 | 6.24 |
| EER88191 | Sorghum | nucleus, plastid | 65.91 | 6.12 |
| EES05581 | Sorghum | nucleus, plastid | 65.91 | 5.94 |
| Os03t0711100-01 | Rice | plastid | 56.82 | 5.94 |
| PGSC0003DMT400020030 | Potato | nucleus | 75.0 | 5.86 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 54.55 | 5.85 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 54.55 | 5.85 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 54.55 | 5.85 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 54.55 | 5.84 |
| Os06t0264200-00 | Rice | plastid | 63.64 | 5.82 |
| Zm00001d013443_P001 | Maize | plastid | 54.55 | 5.81 |
| EER93585 | Sorghum | plastid | 54.55 | 5.71 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 61.36 | 5.42 |
| Zm00001d033719_P001 | Maize | plastid | 52.27 | 4.88 |
| CDY42238 | Canola | nucleus | 6.82 | 0.78 |
| CDY47926 | Canola | nucleus | 6.82 | 0.77 |
| CDY38274 | Canola | nucleus, plastid | 6.82 | 0.76 |
| CDY52734 | Canola | nucleus, plastid | 6.82 | 0.75 |
| CDX78575 | Canola | nucleus | 4.55 | 0.66 |
| CDX70561 | Canola | nucleus | 2.27 | 0.66 |
| CDX85600 | Canola | nucleus | 4.55 | 0.63 |
| CDX77359 | Canola | nucleus | 2.27 | 0.62 |
| CDX91067 | Canola | nucleus | 4.55 | 0.62 |
| CDX69586 | Canola | nucleus, plastid | 4.55 | 0.61 |
| CDY09849 | Canola | nucleus | 4.55 | 0.6 |
| CDX89377 | Canola | plastid | 4.55 | 0.52 |
| CDX94392 | Canola | plastid | 4.55 | 0.52 |
| CDY15597 | Canola | nucleus | 2.27 | 0.51 |
| CDY66177 | Canola | nucleus | 2.27 | 0.51 |
| CDX92740 | Canola | plastid | 4.55 | 0.5 |
| CDY06672 | Canola | nucleus | 2.27 | 0.5 |
| CDY10244 | Canola | nucleus | 2.27 | 0.5 |
| CDY04230 | Canola | nucleus | 2.27 | 0.43 |
| CDY07383 | Canola | cytosol | 2.27 | 0.43 |
| CDY42769 | Canola | nucleus | 2.27 | 0.43 |
Protein Annotations
| EnsemblPlants:CDY04231 | EnsemblPlantsGene:GSBRNA2T00117952001 | GO:A0A078ESK9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31874 |
| PANTHER:PTHR31874:SF21 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDY04231 | ProteinID:CDY04231.1 | UniParc:UPI0004EEE2B8 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC06g25840D
Coordinates
chrLK031950:-:374842..375262
Molecular Weight (calculated)
4817.8 Da
IEP (calculated)
8.506
GRAVY (calculated)
-0.030
Length
44 amino acids
Sequence
(BLAST)
(BLAST)
1: MMKSLANAVG GKTARACDNC VKKRARWYCA ADDAFLCHFC DGFA
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
Arabidopsis Description
COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.