CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019134.1-P	Field mustard	plastid	87.41	90.6
CDY42769	Canola	nucleus	50.38	85.84
CDX89377	Canola	plastid	70.53	73.3
CDX94392	Canola	plastid	70.78	73.18
AT4G25990.2	Thale cress	nucleus	66.75	64.79
CDY52734	Canola	nucleus, plastid	54.91	54.77
CDY38274	Canola	nucleus, plastid	54.16	54.16
CDY42238	Canola	nucleus	51.89	53.37
CDY47926	Canola	nucleus	52.14	52.81
VIT_11s0103g00760.t01	Wine grape	plastid	45.34	43.17
KRH02778	Soybean	nucleus, plastid	42.57	42.46
KRH19100	Soybean	nucleus	42.07	41.85
PGSC0003DMT400059170	Potato	plastid	45.09	41.44
Solyc07g008540.2.1	Tomato	nucleus, plastid	44.58	40.97
GSMUA_Achr6P01780_001	Banana	nucleus	38.79	37.56
GSMUA_Achr7P19660_001	Banana	mitochondrion	38.54	34.54
GSMUA_Achr10P...	Banana	nucleus	26.95	33.23
CDX70561	Canola	nucleus	11.84	31.13
KRH37334	Soybean	nucleus, plastid	29.22	31.02
EES04516	Sorghum	plastid	37.03	30.25
HORVU6Hr1G021460.2	Barley	plastid	36.02	29.18
KRH12328	Soybean	plastid	28.97	29.11
TraesCS6B01G146200.2	Wheat	plastid	36.02	28.95
TraesCS6D01G108000.1	Wheat	plastid	36.02	28.95
Os02t0148000-01	Rice	plastid	34.26	28.87
TraesCS6A01G118000.1	Wheat	plastid	35.77	28.86
Zm00001d015268_P001	Maize	plastid	34.26	28.81
Zm00001d053880_P001	Maize	plastid	33.75	28.33
CDX77359	Canola	nucleus	11.08	27.5
TraesCS7D01G414400.2	Wheat	plastid	31.23	27.13
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	20.15	27.12
TraesCS7A01G422200.1	Wheat	nucleus, plastid	31.23	27.07
TraesCS7B01G322600.1	Wheat	plastid	30.98	26.91
CDY66177	Canola	nucleus	13.35	26.9
Os06t0699600-01	Rice	plastid	31.49	26.82
CDY15597	Canola	nucleus	13.1	26.53
CDY06672	Canola	nucleus	13.1	25.74
CDY10244	Canola	nucleus	12.59	24.75
Zm00001d014664_P001	Maize	plastid	26.95	24.6
KXG20763	Sorghum	plastid	27.2	23.79
CDY07383	Canola	cytosol	12.85	22.17
CDY04230	Canola	nucleus	12.09	20.87
CDX78575	Canola	nucleus	15.37	20.27
CDX69586	Canola	nucleus, plastid	16.12	19.39
CDX91067	Canola	nucleus	15.62	19.2
CDX85600	Canola	nucleus	15.37	19.18
CDY67920	Canola	nucleus	16.62	18.97
CDY65591	Canola	nucleus	16.62	18.97
CDY24402	Canola	nucleus	17.38	18.7
CDY09849	Canola	nucleus	15.37	18.43
CDY03851	Canola	nucleus	17.13	18.28
CDY66242	Canola	nucleus	14.36	18.15
CDY51133	Canola	nucleus	16.62	17.51
CDY53119	Canola	nucleus	16.37	17.29
CDX81527	Canola	nucleus	16.88	16.71
CDY44890	Canola	nucleus	16.88	16.71
CDY36106	Canola	nucleus	14.61	15.1
CDY07382	Canola	nucleus	0.5	4.55
CDY04231	Canola	mitochondrion	0.5	4.55

Protein Annotations

EnsemblPlants:CDX92740	EnsemblPlantsGene:GSBRNA2T00154560001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CCT_domain
InterPro:IPR010402	PANTHER:PTHR31874	PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	ProteinID:CDX92740
ProteinID:CDX92740.1	SEG:seg	UniParc:UPI0004EF2D09	MapMan:35.1	:	:

Description

BnaC07g39980D

Coordinates

chrLK031873:-:585702..587517

Molecular Weight (calculated)

44382.2 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.609

Length

397 amino acids

Sequence
(BLAST)

001: MSSCLSGGAT YTFELKTIKS PPSRAASSHN TPSPSSTISE SNSPPFTIST RRPRTRRKRP NQTYNEAAAL LSTAYPKIFS SKRNTLFLGI KSPLSDYEEA
101: SPLLLPFETI EEVFNPAIQT EPYQFLEKKE FSFNSEVTRF ESLDDFDAVP IILDEEEIEE GIDSFMGSNE SNAGECTTMP WYGSSIGFDS VTNSPLGLGL
201: RSSLREDDGD DDASLCRYPT VELEHISPRI QTTTTAAALA DDGKSDAVDS IKSKMIVTVA VEKKKKKTKK KKVAAAAEES KSVEDLKTEK RVSTFLKLDY
301: DRVLEAWSDK ESPFSDEILG SHATGIDIHA MLAEIDLFGE NGMRESSVLR YKEKRMNRLF SNSKQIRYQV RKLSADQRPR MKGRFVRRPN VRNLSGL

Best Arabidopsis Sequence Match ( AT4G25990.1 )
(BLAST)

001: MSSCAYSFEL EMMKSPPSNN TPSPSSTISE TNSPPFSIST RRPRTPRKRP NQTYDEAAAL LSTAYPKIFS SKKAKTQIFG TNKSPLSDYD EASQLLLPYV
101: SIEENEFLFN PTIPTKTEHF LEQKEVSFDD LEVNGFGVLD DFDAESILDE EIEEGIDSFM GNIESNDGDR ENCYRVGRLE EIMKNAWNGR FRLGLGLRSS
201: LRQNNDENWW KFPTVEFDQI SPRIQTTAAA AADDGQSNVV DSSKIKTIVT AEGDKKKKKK KKKKKVAPAA AESKSSEVTD SNPKLEQRVS PLLKLDYDGV
301: LEAWSGKESP FSDEILGSDA DGVDFHVRLG EIDLFGESGM REASVLRYKE KRRNRLFSKK IRYQVRKLNA DQRPRMKGRF VRRPNARNLS GLRL

Arabidopsis Description

CILCCT motif family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.