Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G108000.1 | Wheat | plastid | 97.76 | 96.96 |
| TraesCS6B01G146200.2 | Wheat | plastid | 97.35 | 96.56 |
| TraesCS6A01G118000.1 | Wheat | plastid | 96.53 | 96.14 |
| EES04516 | Sorghum | plastid | 83.27 | 83.95 |
| Os02t0148000-01 | Rice | plastid | 77.35 | 80.47 |
| Zm00001d015268_P001 | Maize | plastid | 77.14 | 80.08 |
| GSMUA_Achr6P01780_001 | Banana | nucleus | 42.65 | 50.98 |
| HORVU7Hr1G097630.2 | Barley | cytosol, nucleus | 30.61 | 50.85 |
| GSMUA_Achr7P19660_001 | Banana | mitochondrion | 44.29 | 48.98 |
| GSMUA_Achr10P... | Banana | nucleus | 29.59 | 45.03 |
| KRH19100 | Soybean | nucleus | 34.49 | 42.36 |
| KRH02778 | Soybean | nucleus, plastid | 33.88 | 41.71 |
| Solyc07g008540.2.1 | Tomato | nucleus, plastid | 34.9 | 39.58 |
| VIT_11s0103g00760.t01 | Wine grape | plastid | 33.47 | 39.33 |
| PGSC0003DMT400059170 | Potato | plastid | 34.49 | 39.12 |
| CDX89377 | Canola | plastid | 30.0 | 38.48 |
| Bra019134.1-P | Field mustard | plastid | 30.0 | 38.38 |
| Bra013939.1-P | Field mustard | plastid | 29.8 | 38.22 |
| CDY42769 | Canola | nucleus | 17.96 | 37.77 |
| CDX94392 | Canola | plastid | 29.59 | 37.76 |
| CDY38274 | Canola | nucleus, plastid | 30.2 | 37.28 |
| AT4G25990.2 | Thale cress | nucleus | 31.02 | 37.16 |
| CDY52734 | Canola | nucleus, plastid | 30.0 | 36.93 |
| Bra020461.1-P | Field mustard | nucleus | 29.18 | 36.29 |
| Bra002752.1-P | Field mustard | nucleus, plastid | 28.98 | 36.13 |
| CDX92740 | Canola | plastid | 29.18 | 36.02 |
| CDY47926 | Canola | nucleus | 28.78 | 35.97 |
| CDY42238 | Canola | nucleus | 28.16 | 35.75 |
| AT5G57180.2 | Thale cress | nucleus, plastid | 30.82 | 34.71 |
| HORVU2Hr1G056960.1 | Barley | peroxisome | 7.14 | 33.33 |
| KRH37334 | Soybean | nucleus, plastid | 23.47 | 30.75 |
| KRH12328 | Soybean | plastid | 23.88 | 29.62 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 16.94 | 20.24 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 16.94 | 16.67 |
| HORVU7Hr1G074960.1 | Barley | nucleus | 6.12 | 13.27 |
| HORVU7Hr1G074920.1 | Barley | extracellular, mitochondrion | 7.96 | 13.09 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G021460.2 | EnsemblPlantsGene:HORVU6Hr1G021460 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CCT_domain | InterPro:IPR010402 | ncoils:Coil |
| PANTHER:PTHR31874 | PANTHER:PTHR31874:SF7 | PFAM:PF06203 | PFscan:PS51017 | SEG:seg | UniParc:UPI000B477780 |
| UniProt:A0A287TJM2 | MapMan:15.5.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:64743135..64747390
Molecular Weight (calculated)
51614.6 Da
IEP (calculated)
7.463
GRAVY (calculated)
-0.514
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSCIPTGL RLDLDMVKAA ASPGAHSSPL RPAHSSPSST LSEASNASSS ATSVSLKRAR APRKRPNQAY NEAAALLASI HPSVFPVKKS PKTATAPRPP
101: PLSGLAVAFG AAASSSDLLP PLPVLSDAAF LLRDHAASPS PRPPQSPSID ACKNCSSPTP VSSAFREFRD PAPSPASPDT ATDEPGELDF DDDGFDAESI
201: LDVDEAAAGG AAEGIDGIMG SLTMEANTAT ATSDDSILSS SGIHPYLRSL MVVGLAGRFE LGLGSRQSTR PNLNRALKRR DDDGAWWMWP AVPVKDITVT
301: PPTPPQEPAA AVSNTAMPPP ASAAPEKKKS KKKKKVKMEK VLAKEEELAN AKCEEGADGT VDAADGNGDD DGAPTKAPKT GLGLKLDTDD VLKEWSGKGS
401: MFAEGSGPDS SESAAEVRAK LADIDLFPEN GSGGIREARV MRYKEKRRNR LFSKKIRYQV RKVNADCRPR MKGRFVRSPS LLQQALEEES
101: PLSGLAVAFG AAASSSDLLP PLPVLSDAAF LLRDHAASPS PRPPQSPSID ACKNCSSPTP VSSAFREFRD PAPSPASPDT ATDEPGELDF DDDGFDAESI
201: LDVDEAAAGG AAEGIDGIMG SLTMEANTAT ATSDDSILSS SGIHPYLRSL MVVGLAGRFE LGLGSRQSTR PNLNRALKRR DDDGAWWMWP AVPVKDITVT
301: PPTPPQEPAA AVSNTAMPPP ASAAPEKKKS KKKKKVKMEK VLAKEEELAN AKCEEGADGT VDAADGNGDD DGAPTKAPKT GLGLKLDTDD VLKEWSGKGS
401: MFAEGSGPDS SESAAEVRAK LADIDLFPEN GSGGIREARV MRYKEKRRNR LFSKKIRYQV RKVNADCRPR MKGRFVRSPS LLQQALEEES
001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR
Arabidopsis Description
CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.