Factsheet for Bra013939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89377	Canola	plastid	98.17	98.17
Bra019134.1-P	Field mustard	plastid	71.73	71.54
AT4G25990.2	Thale cress	nucleus	70.42	65.77
Bra002752.1-P	Field mustard	nucleus, plastid	57.07	55.47
Bra020461.1-P	Field mustard	nucleus	53.66	52.03
KRH02778	Soybean	nucleus, plastid	46.6	44.72
VIT_11s0103g00760.t01	Wine grape	plastid	48.17	44.12
KRH19100	Soybean	nucleus	45.81	43.86
Solyc07g008540.2.1	Tomato	nucleus, plastid	46.86	41.44
PGSC0003DMT400059170	Potato	plastid	46.34	40.97
GSMUA_Achr6P01780_001	Banana	nucleus	40.58	37.8
GSMUA_Achr10P...	Banana	nucleus	28.53	33.85
GSMUA_Achr7P19660_001	Banana	mitochondrion	39.01	33.63
KRH37334	Soybean	nucleus, plastid	32.72	33.42
KRH12328	Soybean	plastid	32.72	31.65
Bra023461.1-P	Field mustard	cytosol	12.57	31.37
EES04516	Sorghum	plastid	38.48	30.25
HORVU6Hr1G021460.2	Barley	plastid	38.22	29.8
TraesCS6A01G118000.1	Wheat	plastid	37.96	29.47
TraesCS6B01G146200.2	Wheat	plastid	37.96	29.35
TraesCS6D01G108000.1	Wheat	plastid	37.96	29.35
Os02t0148000-01	Rice	plastid	35.34	28.66
Zm00001d053880_P001	Maize	plastid	34.82	28.12
Zm00001d015268_P001	Maize	plastid	34.55	27.97
Os06t0699600-01	Rice	plastid	31.41	25.75
TraesCS7D01G414400.2	Wheat	plastid	30.37	25.38
TraesCS7A01G422200.1	Wheat	nucleus, plastid	30.37	25.33
TraesCS7B01G322600.1	Wheat	plastid	30.1	25.16
Zm00001d014664_P001	Maize	plastid	28.27	24.83
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	19.11	24.75
KXG20763	Sorghum	plastid	28.8	24.23
Bra015548.1-P	Field mustard	nucleus	12.83	24.14
Bra006252.1-P	Field mustard	nucleus	15.97	20.27
Bra032273.1-P	Field mustard	nucleus	14.66	17.83
Bra012475.1-P	Field mustard	nucleus	18.85	17.65
Bra033925.1-P	Field mustard	nucleus	18.32	17.46
Bra024750.1-P	Field mustard	nucleus	18.59	17.15
Bra004035.1-P	Field mustard	nucleus	17.54	14.13
Bra010994.1-P	Field mustard	nucleus	14.92	14.0
Bra008763.1-P	Field mustard	nucleus, plastid	16.49	11.78
Bra023462.1-P	Field mustard	nucleus	3.14	7.55

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra013939	EnsemblPlants:Bra013939.1	EnsemblPlants:Bra013939.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR010402	UniProt:M4DBS9	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF10
UniParc:UPI0002546BE4	SEG:seg	:	:	:	:

Description

AT4G25990 (E=2e-061) CIL | CIL

Coordinates

chrA01:-:8554984..8556579

Molecular Weight (calculated)

42605.1 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.605

Length

382 amino acids

Sequence
(BLAST)

001: MSSCLSGGGA YTFELEMMKS PPSRTTASSS HNTHSPSSTI SESNSPPLAI STRRPRTQRK RPNQTYDEAA ALLSTAYPNI FSSKRKSPLS PLFLSDYDEA
101: SQLLLPFAST EEPGFLFSPT TQTKQDQFLE HYEVSLVNRF GILEDFDAES ILDEEIEEGI NSFMGSIESN DGESGFAGID PLGEMTMLPW HGSSLGLRNS
201: LRECDDASLW MFPTVELEHI SPRIQTTITT AAADDGKPVD VSSSKSKTVA REEKKKKKKK VAAAAAADLK TEQRVSPFLK LDYDRVLEAW SDKESPFSDE
301: ILGSEAAGSD IHARLAEIDL FGESGMREAI VLRYKEKRRN RLFSNSKRIR YQVRKLNADQ RPRMKGRFVR NSNIRNLGGL RL

Best Arabidopsis Sequence Match ( AT4G25990.1 )
(BLAST)

001: MSSCAYSFEL EMMKSPPSNN TPSPSSTISE TNSPPFSIST RRPRTPRKRP NQTYDEAAAL LSTAYPKIFS SKKAKTQIFG TNKSPLSDYD EASQLLLPYV
101: SIEENEFLFN PTIPTKTEHF LEQKEVSFDD LEVNGFGVLD DFDAESILDE EIEEGIDSFM GNIESNDGDR ENCYRVGRLE EIMKNAWNGR FRLGLGLRSS
201: LRQNNDENWW KFPTVEFDQI SPRIQTTAAA AADDGQSNVV DSSKIKTIVT AEGDKKKKKK KKKKKVAPAA AESKSSEVTD SNPKLEQRVS PLLKLDYDGV
301: LEAWSGKESP FSDEILGSDA DGVDFHVRLG EIDLFGESGM REASVLRYKE KRRNRLFSKK IRYQVRKLNA DQRPRMKGRF VRRPNARNLS GLRL

Arabidopsis Description

CILCCT motif family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.