Factsheet for VIT_11s0103g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02778	Soybean	nucleus, plastid	59.47	62.31
KRH19100	Soybean	nucleus	59.23	61.9
PGSC0003DMT400059170	Potato	plastid	59.71	57.64
Solyc07g008540.2.1	Tomato	nucleus, plastid	58.99	56.94
VIT_06s0004g07210.t01	Wine grape	nucleus	12.71	52.48
CDY38274	Canola	nucleus, plastid	48.2	50.63
CDY52734	Canola	nucleus, plastid	48.2	50.5
Bra020461.1-P	Field mustard	nucleus	46.28	48.98
CDY47926	Canola	nucleus	46.04	48.98
CDY42238	Canola	nucleus	44.84	48.45
Bra002752.1-P	Field mustard	nucleus, plastid	45.56	48.35
Bra013939.1-P	Field mustard	plastid	44.12	48.17
CDX89377	Canola	plastid	43.88	47.91
Bra019134.1-P	Field mustard	plastid	43.88	47.78
CDX94392	Canola	plastid	43.88	47.66
AT5G57180.2	Thale cress	nucleus, plastid	48.2	46.21
GSMUA_Achr6P01780_001	Banana	nucleus	44.84	45.61
AT4G25990.2	Thale cress	nucleus	44.6	45.48
CDX92740	Canola	plastid	43.17	45.34
GSMUA_Achr10P...	Banana	nucleus	33.81	43.79
GSMUA_Achr7P19660_001	Banana	mitochondrion	45.8	43.12
CDY42769	Canola	nucleus	23.98	42.92
KRH37334	Soybean	nucleus, plastid	35.73	39.84
KRH12328	Soybean	plastid	34.77	36.71
EES04516	Sorghum	plastid	41.25	35.39
Os02t0148000-01	Rice	plastid	38.85	34.39
Zm00001d053880_P001	Maize	plastid	38.61	34.04
Zm00001d015268_P001	Maize	plastid	37.89	33.47
HORVU6Hr1G021460.2	Barley	plastid	39.33	33.47
TraesCS6A01G118000.1	Wheat	plastid	39.33	33.33
TraesCS6B01G146200.2	Wheat	plastid	39.33	33.2
TraesCS6D01G108000.1	Wheat	plastid	39.33	33.2
Os06t0699600-01	Rice	plastid	35.01	31.33
TraesCS7A01G422200.1	Wheat	nucleus, plastid	32.85	29.91
TraesCS7D01G414400.2	Wheat	plastid	32.61	29.76
TraesCS7B01G322600.1	Wheat	plastid	32.37	29.54
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	20.62	29.15
Zm00001d014664_P001	Maize	plastid	29.5	28.28
KXG20763	Sorghum	plastid	30.22	27.75
VIT_14s0219g00220.t01	Wine grape	nucleus, plastid	18.7	25.16
VIT_01s0011g03520.t01	Wine grape	nucleus	21.58	20.83

Protein Annotations

EntrezGene:100265819	wikigene:100265819	MapMan:15.5.1.2	EMBL:AM472171	ProteinID:CAN72725	ProteinID:CAN72725.1
ProteinID:CCB62246	ProteinID:CCB62246.1	InterPro:CCT_domain	UniProt:F6I5M8	EMBL:FN596751	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR010402	EntrezGene:LOC100265819	wikigene:LOC100265819	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF10	UniParc:UPI000210A27A	ArrayExpress:VIT_11s0103g00760	EnsemblPlantsGene:VIT_11s0103g00760	EnsemblPlants:VIT_11s0103g00760.t01	RefSeq:XP_002268213
RefSeq:XP_002268213.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:16882164..16885827

Molecular Weight (calculated)

46827.1 Da

IEP (calculated)

9.088

GRAVY (calculated)

-0.655

Length

417 amino acids

Sequence
(BLAST)

001: MCGSWVFCGF SFPTESTFII QSHKKMSSCL SGAGRTYGFE LEIVKSPSST SPRTSHSSSP SSTISESSNS PIAISTRKPR TPRKRPNQTY NEAAALLSTA
101: YPNIFSTKNL KNPCKFTKSH DSFLEDSSEL LFPFRAFDAS GFLLHQPVQE KPSFQMLPKV VNCCEKPCQS SVESEFPGKS PELCDGFEED FDAESILDEE
201: IEGGIDSIMG NLSVDNEMSD EATNPVCFNS YYGNGIPMGL GFGGKFEFGF GMRRGVRALR HVDEGDWWRF PTVDILEISP KFNKVSAEKK KKKVEKAQEL
301: RSWESPKGNS IPKSNSSLLL KLNYDDVLSA WSDRGSPFSR ETEFPGNDTA ARLAQIDLFS ECGGVREASV LRYKEKRRTR LFSKKIRYQV RKVNADRRPR
401: MKGRFVRRPN SNSNGQR

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.