CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89377	Canola	plastid	89.32	89.79
CDX92740	Canola	plastid	73.18	70.78
CDY42769	Canola	nucleus	40.89	67.38
AT4G25990.2	Thale cress	nucleus	70.05	65.77
CDY38274	Canola	nucleus, plastid	55.99	54.16
CDY52734	Canola	nucleus, plastid	55.73	53.77
CDY42238	Canola	nucleus	52.08	51.81
CDY47926	Canola	nucleus	52.34	51.28
VIT_11s0103g00760.t01	Wine grape	plastid	47.66	43.88
KRH02778	Soybean	nucleus, plastid	45.05	43.47
KRH19100	Soybean	nucleus	44.27	42.61
Solyc07g008540.2.1	Tomato	nucleus, plastid	45.83	40.74
PGSC0003DMT400059170	Potato	plastid	45.31	40.28
GSMUA_Achr6P01780_001	Banana	nucleus	39.58	37.07
GSMUA_Achr10P...	Banana	nucleus	27.6	32.92
GSMUA_Achr7P19660_001	Banana	mitochondrion	37.76	32.73
KRH37334	Soybean	nucleus, plastid	31.77	32.62
KRH12328	Soybean	plastid	32.03	31.14
CDX70561	Canola	nucleus	11.98	30.46
EES04516	Sorghum	plastid	37.76	29.84
HORVU6Hr1G021460.2	Barley	plastid	37.76	29.59
TraesCS6A01G118000.1	Wheat	plastid	37.5	29.27
TraesCS6D01G108000.1	Wheat	plastid	37.5	29.15
TraesCS6B01G146200.2	Wheat	plastid	37.5	29.15
CDX77359	Canola	nucleus	11.98	28.75
Os02t0148000-01	Rice	plastid	34.64	28.24
Zm00001d015268_P001	Maize	plastid	34.11	27.75
Zm00001d053880_P001	Maize	plastid	34.11	27.7
CDY66177	Canola	nucleus	13.28	25.89
Os06t0699600-01	Rice	plastid	31.25	25.75
TraesCS7D01G414400.2	Wheat	plastid	30.47	25.6
TraesCS7A01G422200.1	Wheat	nucleus, plastid	30.47	25.55
CDY15597	Canola	nucleus	13.02	25.51
TraesCS7B01G322600.1	Wheat	plastid	30.21	25.38
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	19.27	25.08
KXG20763	Sorghum	plastid	29.43	24.89
Zm00001d014664_P001	Maize	plastid	28.12	24.83
CDY07383	Canola	cytosol	14.32	23.91
CDY06672	Canola	nucleus	12.5	23.76
CDY10244	Canola	nucleus	12.24	23.27
CDY04230	Canola	nucleus	13.8	23.04
CDX78575	Canola	nucleus	15.36	19.6
CDX91067	Canola	nucleus	16.41	19.5
CDX85600	Canola	nucleus	16.15	19.5
CDY67920	Canola	nucleus	17.45	19.25
CDY03851	Canola	nucleus	18.49	19.09
CDY65591	Canola	nucleus	17.19	18.97
CDY53119	Canola	nucleus	18.23	18.62
CDY51133	Canola	nucleus	18.23	18.57
CDX69586	Canola	nucleus, plastid	15.62	18.18
CDY66242	Canola	nucleus	14.84	18.15
CDY09849	Canola	nucleus	15.62	18.13
CDY24402	Canola	nucleus	16.93	17.62
CDY44890	Canola	nucleus	17.97	17.21
CDX81527	Canola	nucleus	17.97	17.21
CDY36106	Canola	nucleus	14.58	14.58
CDY07382	Canola	nucleus	0.52	4.55
CDY04231	Canola	mitochondrion	0.52	4.55

Protein Annotations

EnsemblPlants:CDX94392	EnsemblPlantsGene:GSBRNA2T00157524001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CCT_domain
InterPro:IPR010402	PANTHER:PTHR31874	PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	ProteinID:CDX94392
ProteinID:CDX94392.1	SEG:seg	UniParc:UPI0004EEA300	MapMan:15.5.1.2	:	:

Description

BnaC01g17920D

Coordinates

chrLK031881:+:814465..816123

Molecular Weight (calculated)

42869.2 Da

IEP (calculated)

5.054

GRAVY (calculated)

-0.618

Length

384 amino acids

Sequence
(BLAST)

001: MSSCLSGGGA YTFELEMMKS PPSRTAASSS HNTPSPSSTI SEISTRRPRT QRKRPNQTYD EAAALLSTAY PNIFSSKRKS PLNPLFLNDY DEASQLLLPF
101: ESIEDQGFLF SPTIQTKPDD FLEHKEVSFD SEVNRFGFFE DFDAESILDE EIEEGIDSFM GSIESNDGES GFAGIDPLGE MTMLPWQGSS LGLRNSLREC
201: DDASLWMFPT VELEHISPRI QTTITAAALA ADDGEPVDVN SSSKSKTVAG EEKRKMTKKK NVDAAAAAAD LKTEQRVSPL LKLDYDRVLE AWSDKESPFS
301: NEVLGSETAG SDIHARLAEI DLFGESGMRE AIVSRYKEKR RNRLFSNSKR IRYQVRKLSA DQRPRMKGRF VRRSNIRNLG GLRL

Best Arabidopsis Sequence Match ( AT4G25990.1 )
(BLAST)

001: MSSCAYSFEL EMMKSPPSNN TPSPSSTISE TNSPPFSIST RRPRTPRKRP NQTYDEAAAL LSTAYPKIFS SKKAKTQIFG TNKSPLSDYD EASQLLLPYV
101: SIEENEFLFN PTIPTKTEHF LEQKEVSFDD LEVNGFGVLD DFDAESILDE EIEEGIDSFM GNIESNDGDR ENCYRVGRLE EIMKNAWNGR FRLGLGLRSS
201: LRQNNDENWW KFPTVEFDQI SPRIQTTAAA AADDGQSNVV DSSKIKTIVT AEGDKKKKKK KKKKKVAPAA AESKSSEVTD SNPKLEQRVS PLLKLDYDGV
301: LEAWSGKESP FSDEILGSDA DGVDFHVRLG EIDLFGESGM REASVLRYKE KRRNRLFSKK IRYQVRKLNA DQRPRMKGRF VRRPNARNLS GLRL

Arabidopsis Description

CILCCT motif family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.