Factsheet for Solyc07g008540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059170	Potato	plastid	93.52	93.52
VIT_11s0103g00760.t01	Wine grape	plastid	56.94	58.99
KRH19100	Soybean	nucleus	50.0	54.14
KRH02778	Soybean	nucleus, plastid	49.77	54.02
CDY52734	Canola	nucleus, plastid	43.29	46.98
Bra013939.1-P	Field mustard	plastid	41.44	46.86
CDY38274	Canola	nucleus, plastid	43.06	46.85
CDX89377	Canola	plastid	41.2	46.6
CDX94392	Canola	plastid	40.74	45.83
CDY47926	Canola	nucleus	41.44	45.66
Bra002752.1-P	Field mustard	nucleus, plastid	41.44	45.55
Bra020461.1-P	Field mustard	nucleus	41.44	45.43
Bra019134.1-P	Field mustard	plastid	40.28	45.43
CDY42238	Canola	nucleus	40.28	45.08
AT4G25990.2	Thale cress	nucleus	42.36	44.74
CDX92740	Canola	plastid	40.97	44.58
AT5G57180.2	Thale cress	nucleus, plastid	43.98	43.68
GSMUA_Achr6P01780_001	Banana	nucleus	41.2	43.41
CDY42769	Canola	nucleus	22.45	41.63
GSMUA_Achr10P...	Banana	nucleus	30.79	41.3
GSMUA_Achr7P19660_001	Banana	mitochondrion	41.2	40.18
EES04516	Sorghum	plastid	41.2	36.63
Os02t0148000-01	Rice	plastid	38.19	35.03
HORVU6Hr1G021460.2	Barley	plastid	39.58	34.9
TraesCS6A01G118000.1	Wheat	plastid	39.58	34.76
TraesCS6D01G108000.1	Wheat	plastid	39.58	34.62
TraesCS6B01G146200.2	Wheat	plastid	39.58	34.62
KRH37334	Soybean	nucleus, plastid	29.63	34.22
Zm00001d053880_P001	Maize	plastid	37.27	34.04
Zm00001d015268_P001	Maize	plastid	37.04	33.9
KRH12328	Soybean	plastid	28.94	31.65
Os06t0699600-01	Rice	plastid	33.56	31.12
TraesCS7D01G414400.2	Wheat	plastid	31.71	29.98
TraesCS7A01G422200.1	Wheat	nucleus, plastid	31.71	29.91
TraesCS7B01G322600.1	Wheat	plastid	31.48	29.76
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	20.14	29.49
Zm00001d014664_P001	Maize	plastid	29.17	28.97
KXG20763	Sorghum	plastid	29.63	28.19
Solyc02g093590.2.1	Tomato	nucleus	16.44	22.19
Solyc03g119540.2.1	Tomato	nucleus	18.29	19.36
Solyc05g009310.2.1	Tomato	nucleus	18.98	18.76
Solyc04g007210.2.1	Tomato	nucleus	18.29	18.46

Protein Annotations

EnsemblPlants:Solyc07g008540.2.1	EnsemblPlantsGene:Solyc07g008540.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	PANTHER:PTHR31874
PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI000276B412	UniProt:K4CBX3
MapMan:15.5.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:3466133..3469946

Molecular Weight (calculated)

48642.1 Da

IEP (calculated)

8.592

GRAVY (calculated)

-0.765

Length

432 amino acids

Sequence
(BLAST)

001: MSSCLAGGRA AYKLDLEIIK SPSTSWISQS SSPSSTLSES SNSPIAISTR KPRTPRKRPN QTYNEAAALL STVYPKIFSK KHLTKPCKFT KPHYPFSYDS
101: SDLVVPYQIV ENSGFLLHPP LIEKPDCVVI EHKSVSSCEK PCLSPGEIDS KGSGSIDVCE EFHEDFDAES ILDEEIEEGV IDNIMGKIRD ENELKNESIF
201: SYSYSHSKRH QNNSGGTCYG FPIGLGFENG YQYYDFGTMR GGVRPLRNVD DGDNWWRYTS SVNVTDITPK FNKPPIEKKK KKVERLVEMR VGAETSSAKD
301: NSITRKKNKE NSNHSIKEEV IDVPKPKSGL LLKLNFDDVL NAWSDKESPF SDDIQGSDAA GNDVQARLAQ IDLFSENGGI REASVLRYKE KRRTRLFSKK
401: IRYQVRKVNA DRRPRMKGRF VKSPNSPEDE LG

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.