Factsheet for Solyc05g009310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g006030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Solyc05g006030.2.1	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037755	Potato	nucleus	91.76	89.71
CDY04231	Canola	mitochondrion	7.09	70.45
Solyc04g007210.2.1	Tomato	nucleus	56.06	57.24
VIT_01s0011g03520.t01	Wine grape	nucleus	51.03	51.62
CDY03851	Canola	nucleus	41.19	48.39
CDY67920	Canola	nucleus	37.53	47.13
GSMUA_Achr10P...	Banana	nucleus	40.96	46.86
CDY65591	Canola	nucleus	37.3	46.84
CDX77359	Canola	nucleus	16.93	46.25
Bra012475.1-P	Field mustard	nucleus	43.02	46.08
GSMUA_Achr7P18710_001	Banana	plastid	39.82	45.91
CDY51133	Canola	nucleus	39.36	45.62
Bra024750.1-P	Field mustard	nucleus	43.02	45.41
CDY53119	Canola	nucleus	38.9	45.21
AT1G25440.1	Thale cress	nucleus	43.02	45.08
GSMUA_Achr10P...	Banana	nucleus	36.16	45.01
Solyc03g119540.2.1	Tomato	nucleus	41.65	44.61
GSMUA_Achr4P30670_001	Banana	nucleus	37.07	44.14
CDY24402	Canola	nucleus	35.93	42.55
AT1G68520.1	Thale cress	nucleus	39.13	42.12
CDY44890	Canola	nucleus	38.44	41.9
CDX81527	Canola	nucleus	38.44	41.9
GSMUA_Achr7P12560_001	Banana	nucleus	31.81	41.74
Bra033925.1-P	Field mustard	nucleus	37.99	41.4
TraesCS7D01G209000.1	Wheat	nucleus	40.05	40.51
TraesCS7B01G113400.1	Wheat	nucleus	39.82	40.28
TraesCS7A01G206200.1	Wheat	nucleus	39.36	39.81
Os03t0711100-01	Rice	plastid	37.76	39.19
Zm00001d037327_P001	Maize	mitochondrion, nucleus	40.27	38.94
TraesCS4D01G046200.1	Wheat	nucleus, plastid	36.38	38.78
HORVU4Hr1G007420.1	Barley	nucleus, plastid	36.38	38.78
TraesCS4A01G268500.1	Wheat	nucleus, plastid	36.16	38.54
CDY04230	Canola	nucleus	20.14	38.26
TraesCS4B01G045700.1	Wheat	nucleus, plastid	35.93	38.2
TraesCS6A01G293200.1	Wheat	nucleus	37.07	38.03
TraesCS6B01G323400.1	Wheat	nucleus	37.07	37.85
TraesCS6D01G274100.1	Wheat	nucleus	37.3	37.56
Zm00001d045661_P001	Maize	nucleus	39.13	37.5
Os02t0731700-02	Rice	nucleus	37.99	36.73
EER88191	Sorghum	nucleus, plastid	39.82	36.71
Bra004035.1-P	Field mustard	nucleus	39.82	36.71
Zm00001d013443_P001	Maize	plastid	34.32	36.32
Os06t0264200-00	Rice	plastid	39.36	35.76
CDY36106	Canola	nucleus	31.35	35.68
Bra010994.1-P	Field mustard	nucleus	32.72	35.14
EER93585	Sorghum	plastid	33.41	34.76
Zm00001d017939_P001	Maize	nucleus	36.38	34.19
EES05581	Sorghum	nucleus, plastid	37.53	33.61
HORVU6Hr1G073170.1	Barley	nucleus	37.53	32.93
Zm00001d033719_P001	Maize	plastid	32.72	30.36
Solyc02g093590.2.1	Tomato	nucleus	15.56	21.25
Solyc07g008540.2.1	Tomato	nucleus, plastid	18.76	18.98

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
UniProt:K4BXA5	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF21	SMART:SM00336	EnsemblPlantsGene:Solyc05g009310.2	EnsemblPlants:Solyc05g009310.2.1	UniParc:UPI0002766A5F	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:3442971..3445112

Molecular Weight (calculated)

49818.3 Da

IEP (calculated)

5.538

GRAVY (calculated)

-0.774

Length

437 amino acids

Sequence
(BLAST)

001: MVSERKLASA MGGKTTRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLARRHERVR LKTSSLKQTS SPSSSSDDYF PDLESPLSIS SVSVSVSVPS
101: WHRGFTRKAR TPRQGRKASK SAGDGDVIRK NPIHLVPEIL SDENSLDENE EEQLLYRVPI LDPFVGHLYS SSTAPTDADS EFKLESKEMT LQDDICNVDL
201: NRFHEMLPSE MELAEFAADV ESLLGKGLDD ESFDMEGLGL LGVCNKEENS MISHEKVKIE DEGEMEVVTK TTSPTTHNHQ YNHTHDHDID INEDTFEFKF
301: DYDSSINIIG DDEVVTNDEN KKKILLNLDY EGVLKAWADQ RCPWTNGERP ELDSNESWPD CMGNYMGIMN ENVTIVDRGR EARVTRYREK RRTRLFSKKI
401: RYEVRKLNAE KRPRMKGRFV KRANFVTTST PNYPLVK

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.