CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96686
KXG19676
KXG30786
OQU80443

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	EER96686	AT1G60010.1	21798944
AT1G68520.1	KXG19676	AT1G60010.1	21798944
AT1G68520.1	KXG30786	AT1G60010.1	21798944
AT1G68520.1	OQU80443	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033719_P001	Maize	plastid	84.29	75.16
Os03t0711100-01	Rice	plastid	73.81	73.63
TraesCS4A01G268500.1	Wheat	nucleus, plastid	69.05	70.73
TraesCS4D01G046200.1	Wheat	nucleus, plastid	68.57	70.24
TraesCS4B01G045700.1	Wheat	nucleus, plastid	68.33	69.83
HORVU4Hr1G007420.1	Barley	nucleus, plastid	67.14	68.78
CDY04231	Canola	mitochondrion	5.71	54.55
KRH13468	Soybean	cytosol	10.24	43.43
CDY65591	Canola	nucleus	33.81	40.8
CDY67920	Canola	nucleus	33.57	40.52
CDX77359	Canola	nucleus	15.0	39.38
CDY03851	Canola	nucleus	34.05	38.44
CDY53119	Canola	nucleus	33.81	37.77
VIT_01s0011g03520.t01	Wine grape	nucleus	38.81	37.73
KRH35955	Soybean	nucleus	37.38	37.47
CDY51133	Canola	nucleus	33.57	37.4
CDY24402	Canola	nucleus	32.62	37.13
KRG90815	Soybean	nucleus	36.43	36.6
AT1G25440.1	Thale cress	nucleus	35.24	35.49
Bra012475.1-P	Field mustard	nucleus	34.29	35.29
Bra024750.1-P	Field mustard	nucleus	34.76	35.27
Solyc04g007210.2.1	Tomato	nucleus	35.48	34.81
EER88191	Sorghum	nucleus, plastid	38.81	34.39
CDY04230	Canola	nucleus	18.81	34.35
AT1G68520.1	Thale cress	nucleus	33.1	34.24
CDY44890	Canola	nucleus	32.62	34.16
CDX81527	Canola	nucleus	32.62	34.16
Bra033925.1-P	Field mustard	nucleus	32.14	33.67
PGSC0003DMT400037755	Potato	nucleus	35.71	33.56
Solyc05g009310.2.1	Tomato	nucleus	34.76	33.41
CDY36106	Canola	nucleus	28.81	31.51
EES05581	Sorghum	nucleus, plastid	36.19	31.15
Bra010994.1-P	Field mustard	nucleus	29.05	29.98
Bra004035.1-P	Field mustard	nucleus	32.38	28.69
PGSC0003DMT400020030	Potato	nucleus	31.9	23.8
KXG24303	Sorghum	mitochondrion, nucleus	14.05	20.0
EES04516	Sorghum	plastid	20.48	17.7
KXG20763	Sorghum	plastid	15.24	14.1

Protein Annotations

MapMan:15.5.1.2	EntrezGene:8062912	UniProt:C5WN43	InterPro:CCT_domain	EnsemblPlants:EER93585	ProteinID:EER93585
ProteinID:EER93585.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF20	SMART:SM00336
EnsemblPlantsGene:SORBI_3001G118100	unigene:Sbi.11166	UniParc:UPI0001A828A5	RefSeq:XP_002466587.1	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:9206033..9207954

Molecular Weight (calculated)

45997.4 Da

IEP (calculated)

6.587

GRAVY (calculated)

-0.570

Length

420 amino acids

Sequence
(BLAST)

001: MTTSAGAAAG AALGARTARS CDGCMRRRAR WHCPADDAFL CQTCDVSVHS ANPLARRHHR VRLPSASCSS PPCDPDAPTW LHGLKRRPRT PRSKPGGGKH
101: EATTPNSMAA AASAAVPDLE AEESGSGIVG DNDDHGFLVD DDEDLLYRVP VFDPMLAEFY NPVADEGEQK PLAEFYNLVA DEGEQKPACL MPPLVETSPE
201: FASGGLAEAD GLSGFDVPDM ELASFAADME SLLMGVHDGF DDLGFLDEEK PQVNADAYLE AMAAPVPERE DKKRKRPEMI LKLNYDGVIA SWVRDGGSPW
301: FHGERPHLDP YELWSDFPAG SRGLLGGAVT AVTGGEREAR VSRYREKRRT RLFAKKIRYE VRKVNAEKRP RMKGRFVKRT TLPPLPRPPP QQQQKQLPRA
401: LPHVGMVLAP PPGANGRFQF

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.