CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	KRG99257	AT1G60010.1	21798944
AT1G68520.1	KRH45741	AT1G60010.1	21798944
AT1G68520.1	KRH69484	AT1G60010.1	21798944
AT1G68520.1	KRH74672	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90815	Soybean	nucleus	89.74	89.95
CDY04231	Canola	mitochondrion	7.64	72.73
VIT_01s0011g03520.t01	Wine grape	nucleus	59.43	57.64
KRH13468	Soybean	cytosol	12.41	52.53
CDY03851	Canola	nucleus	43.2	48.66
CDY65591	Canola	nucleus	40.33	48.56
CDY67920	Canola	nucleus	40.1	48.28
CDX77359	Canola	nucleus	18.14	47.5
KRH60334	Soybean	nucleus	41.29	47.4
CDY53119	Canola	nucleus	42.0	46.81
GSMUA_Achr10P...	Banana	nucleus	39.14	46.72
CDY51133	Canola	nucleus	42.0	46.68
Bra012475.1-P	Field mustard	nucleus	45.35	46.57
KRH41630	Soybean	nucleus	41.05	46.36
AT1G25440.1	Thale cress	nucleus	45.82	46.04
Bra024750.1-P	Field mustard	nucleus	45.35	45.89
GSMUA_Achr7P18710_001	Banana	plastid	41.29	45.65
AT1G68520.1	Thale cress	nucleus	44.15	45.57
GSMUA_Achr4P30670_001	Banana	nucleus	39.62	45.23
CDX81527	Canola	nucleus	42.96	44.89
CDY44890	Canola	nucleus	42.72	44.64
Bra033925.1-P	Field mustard	nucleus	42.48	44.39
GSMUA_Achr10P...	Banana	nucleus	40.33	44.24
KRH48479	Soybean	nucleus	44.87	44.03
CDY24402	Canola	nucleus	37.95	43.09
CDY04230	Canola	nucleus	23.15	42.17
GSMUA_Achr7P12560_001	Banana	nucleus	33.41	42.04
TraesCS7D01G209000.1	Wheat	nucleus	42.96	41.67
TraesCS7A01G206200.1	Wheat	nucleus	42.48	41.2
TraesCS7B01G113400.1	Wheat	nucleus	42.48	41.2
Os03t0711100-01	Rice	plastid	41.05	40.86
TraesCS4A01G268500.1	Wheat	nucleus, plastid	39.14	40.0
HORVU4Hr1G007420.1	Barley	nucleus, plastid	38.9	39.76
TraesCS4B01G045700.1	Wheat	nucleus, plastid	38.9	39.66
TraesCS4D01G046200.1	Wheat	nucleus, plastid	38.66	39.51
TraesCS6B01G323400.1	Wheat	nucleus	40.33	39.49
Zm00001d013443_P001	Maize	plastid	38.42	38.98
TraesCS6A01G293200.1	Wheat	nucleus	39.62	38.97
Os02t0731700-02	Rice	nucleus	42.0	38.94
Zm00001d037327_P001	Maize	mitochondrion, nucleus	41.77	38.72
TraesCS6D01G274100.1	Wheat	nucleus	40.1	38.71
Bra004035.1-P	Field mustard	nucleus	43.2	38.19
KRH39195	Soybean	nucleus	43.68	38.12
Zm00001d017939_P001	Maize	nucleus	42.24	38.06
EES05581	Sorghum	nucleus, plastid	43.91	37.7
Zm00001d045661_P001	Maize	nucleus	40.81	37.5
EER93585	Sorghum	plastid	37.47	37.38
Os06t0264200-00	Rice	plastid	42.24	36.8
EER88191	Sorghum	nucleus, plastid	41.53	36.71
CDY36106	Canola	nucleus	33.41	36.46
Bra010994.1-P	Field mustard	nucleus	34.61	35.63
HORVU6Hr1G073170.1	Barley	nucleus	40.57	34.14
Zm00001d033719_P001	Maize	plastid	37.47	33.33
KRH17099	Soybean	nucleus	14.56	27.73
KRH72745	Soybean	nucleus	13.13	23.91
KRH07084	Soybean	plastid	17.66	20.9
KRH02778	Soybean	nucleus, plastid	19.57	20.6
KRH19100	Soybean	nucleus	18.85	19.8
KRG94369	Soybean	plastid	15.99	18.93
KRH37334	Soybean	nucleus, plastid	15.51	17.38
KRH12328	Soybean	plastid	14.56	15.44

Protein Annotations

EntrezGene:100782921	MapMan:15.5.1.2	EMBL:ACUP02006714	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_10G274300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	EMBL:HM068904	UniProt:I1LEW9	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlants:KRH35955
ProteinID:KRH35955	ProteinID:KRH35955.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI000233CF3D	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:49716241..49718424

Molecular Weight (calculated)

46897.9 Da

IEP (calculated)

5.404

GRAVY (calculated)

-0.755

Length

419 amino acids

Sequence
(BLAST)

001: MSSATKNAAN AVGAKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NPLARRHERV RLKTASYKST DEQQQQQQQQ PPTWHTKKPR TPRHGKHSRN
101: NNPFHLVPEE GSEEANSHDE NEEQLLYRVP IFDPFVAELC GTNSSPSPVT STDQGVVAAA EVEYKGFQSN GFCSNSSEME NLHGMLPSDA ELAEFAADVE
201: SLLGRGLENE CVGMEELGLV DAKEEECSVG SGKVKMEDQE ESPLVEMEMD MVVGRDDQSF ELSFDYETCE EVKVCDLGLG NELGAKKEND DEVKKNKISL
301: QLDYEAVIIA WASQKSPWTT ADKPNLDPDE CWKQCMGSCE TAYHHPCGEM GGFGIHPVII DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK
401: GRFVKRASFA PPTFPLLNK

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.