Factsheet for Os06t0264200-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0741700-01
Os06t0236300-01
Os08t0420700-01
Os09t0381600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Os02t0741700-01	AT1G60010.1	21798944
AT1G68520.1	Os06t0236300-01	AT1G60010.1	21798944
AT1G68520.1	Os08t0420700-01	AT1G60010.1	21798944
AT1G68520.1	Os09t0381600-01	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G209000.1	Wheat	nucleus	62.99	70.14
TraesCS7B01G113400.1	Wheat	nucleus	62.79	69.91
TraesCS7A01G206200.1	Wheat	nucleus	62.58	69.68
Zm00001d037327_P001	Maize	mitochondrion, nucleus	63.41	67.48
EER88191	Sorghum	nucleus, plastid	65.9	66.88
Zm00001d045661_P001	Maize	nucleus	62.99	66.45
CDY04231	Canola	mitochondrion	5.82	63.64
Os02t0731700-02	Rice	nucleus	55.09	58.63
GSMUA_Achr4P30670_001	Banana	nucleus	40.96	53.68
KRH13468	Soybean	cytosol	10.81	52.53
GSMUA_Achr10P...	Banana	nucleus	35.55	48.72
CDY65591	Canola	nucleus	33.26	45.98
CDY67920	Canola	nucleus	33.26	45.98
CDY03851	Canola	nucleus	34.93	45.16
CDX77359	Canola	nucleus	14.55	43.75
VIT_01s0011g03520.t01	Wine grape	nucleus	39.09	43.52
CDY51133	Canola	nucleus	33.68	42.97
AT1G25440.1	Thale cress	nucleus	37.01	42.69
CDY53119	Canola	nucleus	33.26	42.55
Os03t0711100-01	Rice	plastid	37.21	42.52
Bra024750.1-P	Field mustard	nucleus	36.59	42.51
Bra012475.1-P	Field mustard	nucleus	35.97	42.4
KRH35955	Soybean	nucleus	36.8	42.24
KRG90815	Soybean	nucleus	36.59	42.11
Solyc04g007210.2.1	Tomato	nucleus	37.42	42.06
CDY44890	Canola	nucleus	33.89	40.65
CDX81527	Canola	nucleus	33.68	40.4
Bra033925.1-P	Field mustard	nucleus	33.47	40.15
AT1G68520.1	Thale cress	nucleus	33.47	39.66
CDY24402	Canola	nucleus	30.35	39.57
Solyc05g009310.2.1	Tomato	nucleus	35.76	39.36
CDY04230	Canola	nucleus	18.71	39.13
PGSC0003DMT400037755	Potato	nucleus	35.76	38.48
CDY36106	Canola	nucleus	26.61	33.33
Bra004035.1-P	Field mustard	nucleus	32.64	33.12
Bra010994.1-P	Field mustard	nucleus	27.23	32.19
PGSC0003DMT400020030	Potato	nucleus	34.93	29.84
Os08t0119700-00	Rice	plastid	15.59	21.19
Os02t0148000-01	Rice	plastid	17.67	18.05
Os06t0699600-01	Rice	plastid	14.55	15.02

Protein Annotations

MapMan:15.5.1.2	ProteinID:BAD54363.1	ProteinID:BAF19247.2	ProteinID:BAS97134.1	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlantsGene:Os06g0264200	EnsemblPlants:Os06t0264200-00	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	UniProt:Q0DD26
SMART:SM00336	UniParc:UPI0000447000	InterPro:Znf_B-box	SEG:seg	:	:

Description

B-box-containing protein 17, CCT domain-containing gene 20, CCT (CO, CO-LIKE and TOC1) domain protein 20, CCT domain protein 20Zinc finger, B-box domain containing protein. (Os06t0264200-00)

Coordinates

chr6:+:8704897..8706342

Molecular Weight (calculated)

51733.4 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.498

Length

481 amino acids

Sequence
(BLAST)

001: MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA
101: AKSAAAFGQL LSRRLVVVPE AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG AVENPTKPSM TTTTATTPPL
201: QFFPDGQANF GPTDAELREF AADMEALLGR GLDDGNDEDS FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT
301: TPDEKVGSSG PAAADDDAQL QQSNLALSLN YEAIIESWGT SPWTDGERPH VKLDDSWPRD YSVRATPCTP YASSHRILHN LAGTDDLLRR RAAVQGVWMA
401: AAGVFGHGGE EQALTPRLGM DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRAAAA ATAAVATACV A

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.