Factsheet for Zm00001d045661_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017998_P001
Zm00001d020348_P001
Zm00001d032324_P001
Zm00001d037251_P001
Zm00001d044783_P001
Zm00001d052277_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Zm00001d017998_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d020348_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d032324_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d037251_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d044783_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d052277_P001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037327_P001	Maize	mitochondrion, nucleus	80.48	81.19
EER88191	Sorghum	nucleus, plastid	83.33	80.17
CDY04231	Canola	mitochondrion	6.36	65.91
TraesCS7D01G209000.1	Wheat	nucleus	61.62	65.05
TraesCS7B01G113400.1	Wheat	nucleus	61.4	64.81
TraesCS7A01G206200.1	Wheat	nucleus	61.4	64.81
Os06t0264200-00	Rice	plastid	66.45	62.99
Zm00001d017939_P001	Maize	nucleus	53.73	52.69
GSMUA_Achr4P30670_001	Banana	nucleus	39.91	49.59
KRH13468	Soybean	cytosol	10.75	49.49
CDY03851	Canola	nucleus	36.62	44.89
CDY67920	Canola	nucleus	34.21	44.83
GSMUA_Achr10P...	Banana	nucleus	34.43	44.73
CDY65591	Canola	nucleus	33.99	44.54
VIT_01s0011g03520.t01	Wine grape	nucleus	40.57	42.82
CDY51133	Canola	nucleus	34.87	42.18
CDY53119	Canola	nucleus	34.65	42.02
Bra012475.1-P	Field mustard	nucleus	37.5	41.91
CDX77359	Canola	nucleus	14.69	41.88
Bra024750.1-P	Field mustard	nucleus	37.72	41.55
AT1G25440.1	Thale cress	nucleus	37.94	41.49
KRG90815	Soybean	nucleus	37.72	41.15
CDY44890	Canola	nucleus	36.18	41.15
CDX81527	Canola	nucleus	35.96	40.9
Bra033925.1-P	Field mustard	nucleus	35.96	40.9
KRH35955	Soybean	nucleus	37.5	40.81
AT1G68520.1	Thale cress	nucleus	35.96	40.39
CDY24402	Canola	nucleus	32.68	40.38
Solyc04g007210.2.1	Tomato	nucleus	37.5	39.95
Zm00001d013443_P001	Maize	plastid	35.96	39.71
Solyc05g009310.2.1	Tomato	nucleus	37.5	39.13
CDY04230	Canola	nucleus	19.74	39.13
PGSC0003DMT400037755	Potato	nucleus	37.06	37.81
CDY36106	Canola	nucleus	28.73	34.11
Zm00001d033719_P001	Maize	plastid	35.09	33.97
Bra010994.1-P	Field mustard	nucleus	29.82	33.42
Bra004035.1-P	Field mustard	nucleus	33.99	32.7
PGSC0003DMT400020030	Potato	nucleus	35.31	28.6
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	13.16	22.14
Zm00001d035134_P001	Maize	plastid	12.94	22.1
Zm00001d053880_P001	Maize	plastid	17.76	17.12
Zm00001d015268_P001	Maize	plastid	17.32	16.74
Zm00001d014664_P001	Maize	plastid	13.6	14.25

Protein Annotations

MapMan:15.5.1.2	ProteinID:AQL02938.1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	UniProt:K7VBR1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	SMART:SM00336	UniParc:UPI0001E24C2C	EnsemblPlantsGene:Zm00001d045661	EnsemblPlants:Zm00001d045661_P001
EnsemblPlants:Zm00001d045661_T001	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

C2C2-CO-like-transcription factor 4Zinc finger protein CONSTANS-LIKE 16

Coordinates

chr9:+:32056769..32058471

Molecular Weight (calculated)

49289.3 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.561

Length

456 amino acids

Sequence
(BLAST)

001: MIATTTTGSS AKAAAVGGKE ARACDACLRR RARWYCAADD AFLCQVCDTS VHSANSLARR HERLRLRPTS PLQTPPPPTP ASANRESHDE VVPAWFKRKA
101: RTPRGGRAKS DVRTLSRRLV VPHAAGGDSP DGRNDEGEFE AEEPEEEVLY RVPVFDPALA EFCSPQPLED AAALASSCNE DGAVEDPAKT DRETPAAAPL
201: VQFFPDGGHA NFGPTDAELR EFAADMEALL GYGLDDGNEE SSSFCMETLG LLEPVEVGED ASRVKVETDA GSACEASGTL ACALELLDPD ASDEMLDIDF
301: NYGSPQDTTT TENAASSSHT GTDGQFLQTS LSLTLNYEAI IQSWGSSPWT GGAERPHVKL DDSWPHDCTN MWVVGRGMVG HGGEDLLGTP RLGQGMDDVG
401: REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRATAGGSL TIAGLA

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.