Factsheet for Zm00001d037327_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017998_P001
Zm00001d020348_P001
Zm00001d032324_P001
Zm00001d037251_P001
Zm00001d044783_P001
Zm00001d052277_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Zm00001d017998_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d020348_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d032324_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d037251_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d044783_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d052277_P001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88191	Sorghum	nucleus, plastid	86.28	82.28
Zm00001d045661_P001	Maize	nucleus	81.19	80.48
TraesCS7D01G209000.1	Wheat	nucleus	63.27	66.2
TraesCS7A01G206200.1	Wheat	nucleus	63.05	65.97
TraesCS7B01G113400.1	Wheat	nucleus	63.05	65.97
CDY04231	Canola	mitochondrion	6.42	65.91
Os06t0264200-00	Rice	plastid	67.48	63.41
Zm00001d017939_P001	Maize	nucleus	55.75	54.19
KRH13468	Soybean	cytosol	11.5	52.53
GSMUA_Achr4P30670_001	Banana	nucleus	41.37	50.95
CDY67920	Canola	nucleus	35.4	45.98
GSMUA_Achr10P...	Banana	nucleus	35.62	45.87
CDY03851	Canola	nucleus	37.61	45.7
CDY65591	Canola	nucleus	35.18	45.69
VIT_01s0011g03520.t01	Wine grape	nucleus	42.04	43.98
CDX77359	Canola	nucleus	15.49	43.75
CDY51133	Canola	nucleus	35.84	42.97
Bra012475.1-P	Field mustard	nucleus	38.72	42.89
CDY53119	Canola	nucleus	35.62	42.82
Bra024750.1-P	Field mustard	nucleus	38.94	42.51
AT1G25440.1	Thale cress	nucleus	39.16	42.45
KRG90815	Soybean	nucleus	39.16	42.34
KRH35955	Soybean	nucleus	38.72	41.77
CDY44890	Canola	nucleus	36.73	41.4
CDX81527	Canola	nucleus	36.73	41.4
Bra033925.1-P	Field mustard	nucleus	36.5	41.15
Solyc04g007210.2.1	Tomato	nucleus	38.72	40.89
CDY24402	Canola	nucleus	33.19	40.65
Zm00001d013443_P001	Maize	plastid	36.95	40.44
CDY04230	Canola	nucleus	20.58	40.43
AT1G68520.1	Thale cress	nucleus	36.28	40.39
Solyc05g009310.2.1	Tomato	nucleus	38.94	40.27
PGSC0003DMT400037755	Potato	nucleus	38.5	38.93
Zm00001d033719_P001	Maize	plastid	36.06	34.61
CDY36106	Canola	nucleus	28.98	34.11
Bra004035.1-P	Field mustard	nucleus	34.96	33.33
Bra010994.1-P	Field mustard	nucleus	29.87	33.17
PGSC0003DMT400020030	Potato	nucleus	36.06	28.95
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	13.27	22.14
Zm00001d035134_P001	Maize	plastid	12.83	21.72
Zm00001d053880_P001	Maize	plastid	18.36	17.55
Zm00001d015268_P001	Maize	plastid	18.14	17.37
Zm00001d014664_P001	Maize	plastid	13.5	14.02

Protein Annotations

EntrezGene:100272654	MapMan:15.5.1.2	ProteinID:AQK83620.1	EMBL:BT063806	UniProt:C0P687	InterPro:CCT_domain
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	EMBL:KJ727940	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	SMART:SM00336
UniParc:UPI00019490AB	EnsemblPlantsGene:Zm00001d037327	EnsemblPlants:Zm00001d037327_P001	EnsemblPlants:Zm00001d037327_T001	InterPro:Znf_B-box	SEG:seg

Description

C2C2-CO-like-transcription factor 10Zinc finger protein CONSTANS-LIKE 7

Coordinates

chr6:+:121369894..121371711

Molecular Weight (calculated)

48382.5 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.476

Length

452 amino acids

Sequence
(BLAST)

001: MIATTRGSSA KAAAAVGGKA ARACDGCLRR RARWYCAADD AFLCQGCDTS VHSANPLARR HERLRLCPAS PLQTPPDRSA AAAATATNKR ERHDEVAVPA
101: WFGRKARTPR GGHAKSVGQV ALSRRLVVPH AAGGDSDSPD ERNGGEEEQL LYRVPILDPA LAEFCSPPPL EDAAGLALDA SVCNEDGAIE DPAKPDPAAP
201: LAQFCPVSGH FNFGPTDAEL REFAADMEAL LGHGLDDGNE EDSSFYMETL GLLDPMEVGD DATQVKVETD GSSACCEASG TLACGLELDL EASDEMLDID
301: FDYASPQDTA TDERAASSDT GADAQFLQTS LSLTLNYEAI IQSWGSSPWT GGGERPHVKL DTRWPHDYTN MWVVGGVVGH GGEDLPGTPR LGMDGGREAR
401: VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA TAGGSLAIAG LA

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.