Factsheet for GSMUA_Achr4P30670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06040_001
GSMUA_Achr3P10380_001
GSMUA_Achr5P23980_001
GSMUA_Achr9P18270_001
GSMUA_Achr9P28200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	GSMUA_Achr3P06040_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr3P10380_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr5P23980_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P18270_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P28200_001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04231	Canola	mitochondrion	6.81	56.82
KRH13468	Soybean	cytosol	14.17	52.53
GSMUA_Achr10P...	Banana	nucleus	50.14	52.42
GSMUA_Achr10P...	Banana	nucleus	51.23	49.21
GSMUA_Achr7P18710_001	Banana	plastid	49.59	48.02
TraesCS7D01G209000.1	Wheat	nucleus	50.68	43.06
GSMUA_Achr7P12560_001	Banana	nucleus	38.96	42.94
TraesCS7A01G206200.1	Wheat	nucleus	50.41	42.82
TraesCS7B01G113400.1	Wheat	nucleus	50.41	42.82
CDY65591	Canola	nucleus	40.6	42.82
CDY67920	Canola	nucleus	40.6	42.82
CDY03851	Canola	nucleus	42.51	41.94
TraesCS6B01G323400.1	Wheat	nucleus	48.77	41.82
TraesCS6D01G274100.1	Wheat	nucleus	49.32	41.71
Zm00001d037327_P001	Maize	mitochondrion, nucleus	50.95	41.37
Os06t0264200-00	Rice	plastid	53.68	40.96
TraesCS6A01G293200.1	Wheat	nucleus	47.41	40.85
VIT_01s0011g03520.t01	Wine grape	nucleus	47.96	40.74
Zm00001d017939_P001	Maize	nucleus	51.5	40.65
Os02t0731700-02	Rice	nucleus	49.86	40.49
CDX77359	Canola	nucleus	17.44	40.0
Zm00001d045661_P001	Maize	nucleus	49.59	39.91
EER88191	Sorghum	nucleus, plastid	51.5	39.87
KRH35955	Soybean	nucleus	45.23	39.62
CDY51133	Canola	nucleus	40.6	39.52
EES05581	Sorghum	nucleus, plastid	52.04	39.14
CDY53119	Canola	nucleus	40.05	39.1
AT1G25440.1	Thale cress	nucleus	44.41	39.09
Bra012475.1-P	Field mustard	nucleus	43.32	38.97
CDY04230	Canola	nucleus	24.25	38.7
Bra024750.1-P	Field mustard	nucleus	43.32	38.41
CDY24402	Canola	nucleus	38.42	38.21
CDX81527	Canola	nucleus	41.69	38.15
Solyc04g007210.2.1	Tomato	nucleus	44.41	38.08
KRG90815	Soybean	nucleus	43.32	38.04
CDY44890	Canola	nucleus	41.42	37.91
Bra033925.1-P	Field mustard	nucleus	41.14	37.66
Solyc05g009310.2.1	Tomato	nucleus	44.14	37.07
HORVU6Hr1G073170.1	Barley	nucleus	49.05	36.14
AT1G68520.1	Thale cress	nucleus	39.78	35.96
PGSC0003DMT400037755	Potato	nucleus	43.6	35.79
CDY36106	Canola	nucleus	34.06	32.55
Bra010994.1-P	Field mustard	nucleus	34.06	30.71
Bra004035.1-P	Field mustard	nucleus	39.51	30.59
PGSC0003DMT400020030	Potato	nucleus	40.6	26.47
GSMUA_Achr11P...	Banana	nucleus	13.35	25.93
GSMUA_Achr10P...	Banana	nucleus	17.71	22.57
GSMUA_Achr6P01780_001	Banana	nucleus	21.53	19.27
GSMUA_Achr7P19660_001	Banana	mitochondrion	21.8	18.06
GSMUA_Achr10P...	Banana	nucleus	12.81	14.6

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr4G30670_001	EnsemblPlants:GSMUA_Achr4P30670_001
EnsemblPlants:GSMUA_Achr4T30670_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0STH9	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI0002957988
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 16 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30670_001]

Coordinates

chr4:+:28159531..28160834

Molecular Weight (calculated)

40152.0 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.615

Length

367 amino acids

Sequence
(BLAST)

001: MSYAEKQRSA GAVAARTARA CDSCLRRRAR WFCEADDAFL CQSCDASVHS ANPLARRHRR VRLDTASCSS PSSSSSSPPT DDVSGDHSMP PWLHGFKRKP
101: RTPRGKPGRA LAAAKVETLV PDLETMSTEE NQSNEEEQLL HCVPTLDPLL IESCSQHPVD DGSPSEDDVK PALQLADFAH VSAADGLAGF RPSDLDLAEF
201: ASDMEALLGR GLDDHSFCID GLGLADATLE DDGMEHVKKP SPEAATKRRP ILRLDYEAVI AAWSSNGCSP WTDGERPQFD PSDAWADFLV AEAGGGGEVQ
301: GMYQQAGHMA AVDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKQAA APALSCR

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.