CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96686
KXG19676
KXG30786
OQU80443

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	EER96686	AT1G60010.1	21798944
AT1G68520.1	KXG19676	AT1G60010.1	21798944
AT1G68520.1	KXG30786	AT1G60010.1	21798944
AT1G68520.1	OQU80443	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017939_P001	Maize	nucleus	84.43	88.6
Os02t0731700-02	Rice	nucleus	62.91	67.92
TraesCS6B01G323400.1	Wheat	nucleus	59.22	67.52
TraesCS6D01G274100.1	Wheat	nucleus	59.63	67.05
TraesCS6A01G293200.1	Wheat	nucleus	57.99	66.43
CDY04231	Canola	mitochondrion	5.94	65.91
HORVU6Hr1G073170.1	Barley	nucleus	58.81	57.63
EER88191	Sorghum	nucleus, plastid	53.07	54.64
GSMUA_Achr4P30670_001	Banana	nucleus	39.14	52.04
KRH13468	Soybean	cytosol	9.84	48.48
GSMUA_Achr10P...	Banana	nucleus	32.17	44.73
KRH35955	Soybean	nucleus	37.7	43.91
CDY65591	Canola	nucleus	30.94	43.39
CDY67920	Canola	nucleus	30.74	43.1
CDY03851	Canola	nucleus	32.38	42.47
KRG90815	Soybean	nucleus	35.86	41.87
VIT_01s0011g03520.t01	Wine grape	nucleus	36.89	41.67
CDX77359	Canola	nucleus	13.32	40.62
CDY53119	Canola	nucleus	31.15	40.43
CDY51133	Canola	nucleus	31.15	40.32
CDY44890	Canola	nucleus	32.79	39.9
Bra033925.1-P	Field mustard	nucleus	32.79	39.9
AT1G25440.1	Thale cress	nucleus	34.02	39.81
Bra012475.1-P	Field mustard	nucleus	33.2	39.71
Bra024750.1-P	Field mustard	nucleus	33.61	39.61
CDX81527	Canola	nucleus	32.38	39.4
Solyc04g007210.2.1	Tomato	nucleus	34.22	39.02
AT1G68520.1	Thale cress	nucleus	32.38	38.92
CDY04230	Canola	nucleus	18.03	38.26
PGSC0003DMT400037755	Potato	nucleus	34.84	38.03
CDY24402	Canola	nucleus	28.48	37.67
Solyc05g009310.2.1	Tomato	nucleus	33.61	37.53
EER93585	Sorghum	plastid	31.15	36.19
Bra004035.1-P	Field mustard	nucleus	30.94	31.86
CDY36106	Canola	nucleus	24.8	31.51
Bra010994.1-P	Field mustard	nucleus	25.82	30.96
PGSC0003DMT400020030	Potato	nucleus	30.74	26.64
KXG24303	Sorghum	mitochondrion, nucleus	13.11	21.69
EES04516	Sorghum	plastid	17.62	17.7
KXG20763	Sorghum	plastid	12.5	13.44

Protein Annotations

MapMan:15.5.1.2	UniProt:C5XZC4	InterPro:CCT_domain	ncoils:Coil	EnsemblPlants:EES05581	ProteinID:EES05581
ProteinID:EES05581.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	SMART:SM00336
EnsemblPlantsGene:SORBI_3004G249500	UniParc:UPI0001A8551E	RefSeq:XP_002452605.1	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:59636011..59638127

Molecular Weight (calculated)

52606.7 Da

IEP (calculated)

5.573

GRAVY (calculated)

-0.518

Length

488 amino acids

Sequence
(BLAST)

001: MSSSKHAAAG AGAVGGKAAR ACDSCLRRRA RWYCAADDAF LCQGCDASVH SANPLARRHE RLRLRPMTSP PDPAHSTLEA GGVGVASTST WKKRQQQQQQ
101: VAPAWSKRKA RTRRPHVKSV GQLLSRKLVV VPEVATVESS EERKVEEEDE EEEEEEEQLL YCVPTFDRAL AELCTPPPPL DDPTATASSS CCRDNDVDGA
201: VDNAKAAPPA VVVAESPVQQ LPDSFAGFGP TDAELREFAA DMEALLGQGL GDSNELDESF YMESLGLMTT TQQAEDVDVG RVKMEPNGSV ISRSRGEGAP
301: GFGPAELMKP EASSAEVLVL DIDFNCSSPT VMMDHEDEDS FEHKASASNG DAAAAGTQFL KRSLDLSLNY EAIIESWGSS PWTDGQRPNV QLDDFWPHAH
401: LTGWMAGGGR LGGEAAAVSP RLGMVGGREA RVTRYREKRR TRLFAKKIRY EVRKLNAEKR PRMKGRFVKR PAAAGGGGAA IAAPCAVT

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.