CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015268_P001	Maize	plastid	89.3	91.95
HORVU6Hr1G021460.2	Barley	plastid	83.95	83.27
TraesCS6D01G108000.1	Wheat	plastid	84.57	83.2
TraesCS6B01G146200.2	Wheat	plastid	83.95	82.59
Os02t0148000-01	Rice	plastid	80.04	82.59
TraesCS6A01G118000.1	Wheat	plastid	83.33	82.32
KXG20763	Sorghum	plastid	49.59	53.08
GSMUA_Achr6P01780_001	Banana	nucleus	43.83	51.95
GSMUA_Achr7P19660_001	Banana	mitochondrion	45.47	49.89
GSMUA_Achr10P...	Banana	nucleus	30.66	46.27
KRH02778	Soybean	nucleus, plastid	36.01	43.97
KRH19100	Soybean	nucleus	35.8	43.61
PGSC0003DMT400059170	Potato	plastid	36.83	41.44
VIT_11s0103g00760.t01	Wine grape	plastid	35.39	41.25
Solyc07g008540.2.1	Tomato	nucleus, plastid	36.63	41.2
Bra019134.1-P	Field mustard	plastid	31.07	39.43
CDY42769	Canola	nucleus	18.72	39.06
CDX89377	Canola	plastid	30.45	38.74
CDY38274	Canola	nucleus, plastid	31.48	38.54
Bra013939.1-P	Field mustard	plastid	30.25	38.48
CDY52734	Canola	nucleus, plastid	31.28	38.19
CDX94392	Canola	plastid	29.84	37.76
Bra002752.1-P	Field mustard	nucleus, plastid	30.25	37.4
Bra020461.1-P	Field mustard	nucleus	30.25	37.31
CDX92740	Canola	plastid	30.25	37.03
CDY47926	Canola	nucleus	29.84	36.99
AT4G25990.2	Thale cress	nucleus	31.07	36.92
CDY42238	Canola	nucleus	29.22	36.79
AT5G57180.2	Thale cress	nucleus, plastid	32.3	36.09
KRH37334	Soybean	nucleus, plastid	23.66	30.75
KRH12328	Soybean	plastid	23.87	29.37
KXG24303	Sorghum	mitochondrion, nucleus	14.61	24.07
EER93585	Sorghum	plastid	17.7	20.48
EER88191	Sorghum	nucleus, plastid	19.34	19.83
EES05581	Sorghum	nucleus, plastid	17.7	17.62

Protein Annotations

EnsemblPlants:EES04516	EnsemblPlantsGene:SORBI_3004G040100	EntrezGene:8074627	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31874	PANTHER:PTHR31874:SF7	PFAM:PF06203	PFscan:PS51017	ProteinID:EES04516	ProteinID:EES04516.1
RefSeq:XP_002451540.1	SEG:seg	UniParc:UPI0001A85476	UniProt:C5XUM9	MapMan:15.5.1.2	:

Description

hypothetical protein

Coordinates

chr4:+:3304055..3307357

Molecular Weight (calculated)

51197.3 Da

IEP (calculated)

8.309

GRAVY (calculated)

-0.469

Length

486 amino acids

Sequence
(BLAST)

001: MSSSCIPTGL RLDLDMVKAA ASPGAHSSPL RPVHSSPSST LSEASNASSS ATSVSLKRAR APRKRPNQAY NEAAALLASI HPSVFPVKKS PKTGPPRPPS
101: RQLSGLAAAF DASSDLLPPL PVLADSAFLL RDMPAPSPSP QPQSPSGAKN CSSPAPVSSA FRDFRDPAPS PASPDTVDVD ELGEIDFDDD GFDAESILDV
201: DEAAAGAAAE GLDGIMGSLT VESNNTATTS DDSILSSSGI HPYLRSLMVV GLAGRFELGL GFRHGARPNL NRALKRRDDD GAWWMWPAVP VKDLTIAPPT
301: PPAPPASNAA MPQAAAAPEK KKSKKKKVVK VEKIMAKGKE ELPNAKCKEE EADASVDAAN GDGDADSAPT KAPKTGLGLK LDADEVLKAW SDKGSMFAEG
401: SGPESPTSAA EVRAKLADID LFPENGAGGG IREASVLRYK EKRRTRLFSK KIRYQVRKVN ADCRPRMKGR FVRSPSLLQQ ALEEES

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.