Factsheet for GSMUA_Achr6P01780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	53.9	68.63
GSMUA_Achr7P19660_001	Banana	mitochondrion	72.44	67.04
KRH19100	Soybean	nucleus	44.15	45.36
KRH02778	Soybean	nucleus, plastid	43.66	44.97
VIT_11s0103g00760.t01	Wine grape	plastid	45.61	44.84
EES04516	Sorghum	plastid	51.95	43.83
Os02t0148000-01	Rice	plastid	49.51	43.1
HORVU6Hr1G021460.2	Barley	plastid	50.98	42.65
TraesCS6A01G118000.1	Wheat	plastid	50.98	42.48
TraesCS6B01G146200.2	Wheat	plastid	50.98	42.31
TraesCS6D01G108000.1	Wheat	plastid	50.98	42.31
Zm00001d015268_P001	Maize	plastid	48.54	42.16
Zm00001d053880_P001	Maize	plastid	47.8	41.44
PGSC0003DMT400059170	Potato	plastid	43.66	41.44
Solyc07g008540.2.1	Tomato	nucleus, plastid	43.41	41.2
Bra019134.1-P	Field mustard	plastid	38.29	40.99
CDY52734	Canola	nucleus, plastid	39.76	40.95
Bra013939.1-P	Field mustard	plastid	37.8	40.58
CDY38274	Canola	nucleus, plastid	39.27	40.55
CDX89377	Canola	plastid	37.56	40.31
Bra002752.1-P	Field mustard	nucleus, plastid	38.54	40.2
CDX94392	Canola	plastid	37.07	39.58
CDX92740	Canola	plastid	37.56	38.79
CDY42769	Canola	nucleus	21.95	38.63
CDY42238	Canola	nucleus	36.34	38.6
CDY47926	Canola	nucleus	36.83	38.52
Bra020461.1-P	Field mustard	nucleus	36.83	38.32
AT5G57180.2	Thale cress	nucleus, plastid	40.49	38.16
AT4G25990.2	Thale cress	nucleus	36.83	36.92
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	26.34	36.61
TraesCS7A01G422200.1	Wheat	nucleus, plastid	40.49	36.24
TraesCS7D01G414400.2	Wheat	plastid	40.24	36.1
TraesCS7B01G322600.1	Wheat	plastid	40.24	36.1
Os06t0699600-01	Rice	plastid	40.24	35.41
Zm00001d014664_P001	Maize	plastid	35.12	33.1
KXG20763	Sorghum	plastid	35.37	31.94
KRH37334	Soybean	nucleus, plastid	28.78	31.55
KRH12328	Soybean	plastid	28.54	29.62
GSMUA_Achr11P...	Banana	nucleus	11.22	24.34
GSMUA_Achr4P30670_001	Banana	nucleus	19.27	21.53
GSMUA_Achr10P...	Banana	nucleus	13.9	19.79
GSMUA_Achr10P...	Banana	nucleus	18.05	19.37
GSMUA_Achr7P12560_001	Banana	nucleus	15.61	19.22
GSMUA_Achr10P...	Banana	nucleus	16.34	19.09
GSMUA_Achr7P18710_001	Banana	plastid	17.56	19.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P01780_001	EnsemblPlants:GSMUA_Achr6T01780_001	EnsemblPlantsGene:GSMUA_Achr6G01780_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31874	PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI000295074F
UniProt:M0T3C6	MapMan:35.1	:	:	:	:

Description

Putative Protein CHLOROPLAST IMPORT APPARATUS 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G01780_001]

Coordinates

chr6:-:1157647..1158979

Molecular Weight (calculated)

44656.4 Da

IEP (calculated)

9.454

GRAVY (calculated)

-0.636

Length

410 amino acids

Sequence
(BLAST)

001: MSSCLGGGGG RAYGFDLDIV KPSSPSSGRS SDSSSPSSTL SESSNTISIK RARTPRKRPN QTYNEAAALL STIYPNIFST KSLKKLSKNP RTLASFPESS
101: DLLPPFPVLG DAGFLIDKIQ PEKPAAVRVE LKLKVPFEKE CTSPVSNVSW EPNSPNPFDD DDDFDAESIL DQEVEAGIDS IMGNLNTNTP TDDDTSEGSN
201: HSNSGINPLL RSLIGCKMGG KFELGLGFRL RRNLQRALRN SDEGYWWRSP TVPVRDITPD INPSTATVTP PALEKKKKKK VDKEEVDGTK NSASATPNPP
301: QEKLKASLGL KLSHEEVINA WSDSGSIFSD GPDSPNSSAD ALARLADIDL FLDAAGVGGV REASVLRYKE KRRSRLFSKM IRYQVRKTNA DRRPRMKASS
401: RLHLSPLSGF

Best Arabidopsis Sequence Match ( AT4G25990.3 )
(BLAST)

001: MSSCAYSFEL EMMKSPPSNN TPSPSSTISE TNSPPFSIST RRPRTPRKRP NQTYDEAAAL LSTAYPKIFS SKKAKTQIFG TNKSPLSDYD EASQLLLPYV
101: SIEENEFLFN PTIPTKTEHF LEQKEVSFDD LEVNGFGVLD DFDAESILDE EIEEGIDSFM GNIESNDGDR ENCYRVGRLE EIMKNAWNGR FRLGLGLRSS
201: LRQNNDENWW KFPTVEFDQI SPRIQTTAAA AADDGQSNVV DSSKIKTIVT AEGDKKKKKK KKKKKVAPAA AESKSSEVTD SNPKLEQRVS PLLKLDYDGV
301: LEAWSGKESP FSDEILGSDA DGVDFHVRLG EIDLFGESGM REASVLRYKE KRRNRLFSKK IRYQVRKLNA DQRPRMKV

Arabidopsis Description

CILCCT motif family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.