CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013939.1-P	Field mustard	plastid	98.17	98.17
CDX94392	Canola	plastid	89.79	89.32
CDX92740	Canola	plastid	73.3	70.53
CDY42769	Canola	nucleus	41.62	68.24
AT4G25990.2	Thale cress	nucleus	70.42	65.77
CDY38274	Canola	nucleus, plastid	58.38	56.17
CDY52734	Canola	nucleus, plastid	58.38	56.03
CDY42238	Canola	nucleus	53.93	53.37
CDY47926	Canola	nucleus	53.93	52.55
KRH02778	Soybean	nucleus, plastid	46.6	44.72
VIT_11s0103g00760.t01	Wine grape	plastid	47.91	43.88
KRH19100	Soybean	nucleus	45.81	43.86
Solyc07g008540.2.1	Tomato	nucleus, plastid	46.6	41.2
PGSC0003DMT400059170	Potato	plastid	46.07	40.74
GSMUA_Achr6P01780_001	Banana	nucleus	40.31	37.56
GSMUA_Achr10P...	Banana	nucleus	28.53	33.85
GSMUA_Achr7P19660_001	Banana	mitochondrion	39.01	33.63
KRH37334	Soybean	nucleus, plastid	32.46	33.16
CDX70561	Canola	nucleus	12.57	31.79
KRH12328	Soybean	plastid	32.72	31.65
EES04516	Sorghum	plastid	38.74	30.45
HORVU6Hr1G021460.2	Barley	plastid	38.48	30.0
TraesCS6A01G118000.1	Wheat	plastid	38.22	29.67
TraesCS6D01G108000.1	Wheat	plastid	38.22	29.55
TraesCS6B01G146200.2	Wheat	plastid	38.22	29.55
Os02t0148000-01	Rice	plastid	35.6	28.87
CDX77359	Canola	nucleus	12.04	28.75
Zm00001d053880_P001	Maize	plastid	35.08	28.33
Zm00001d015268_P001	Maize	plastid	34.55	27.97
CDY66177	Canola	nucleus	13.61	26.4
CDY15597	Canola	nucleus	13.35	26.02
Os06t0699600-01	Rice	plastid	31.41	25.75
TraesCS7D01G414400.2	Wheat	plastid	30.37	25.38
TraesCS7A01G422200.1	Wheat	nucleus, plastid	30.37	25.33
CDY06672	Canola	nucleus	13.35	25.25
TraesCS7B01G322600.1	Wheat	plastid	30.1	25.16
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	19.37	25.08
Zm00001d014664_P001	Maize	plastid	28.53	25.06
CDY07383	Canola	cytosol	14.92	24.78
CDY10244	Canola	nucleus	13.09	24.75
KXG20763	Sorghum	plastid	29.06	24.45
CDY04230	Canola	nucleus	13.87	23.04
CDX78575	Canola	nucleus	16.75	21.26
CDX85600	Canola	nucleus	17.02	20.44
CDX91067	Canola	nucleus	17.28	20.43
CDX69586	Canola	nucleus, plastid	17.28	20.0
CDY67920	Canola	nucleus	17.28	18.97
CDY65591	Canola	nucleus	17.28	18.97
CDY53119	Canola	nucleus	18.59	18.88
CDY03851	Canola	nucleus	18.32	18.82
CDY09849	Canola	nucleus	16.23	18.73
CDY51133	Canola	nucleus	18.06	18.3
CDY66242	Canola	nucleus	14.92	18.15
CDX81527	Canola	nucleus	18.32	17.46
CDY44890	Canola	nucleus	18.32	17.46
CDY24402	Canola	nucleus	16.75	17.34
CDY36106	Canola	nucleus	14.14	14.06
CDY04231	Canola	mitochondrion	0.52	4.55
CDY07382	Canola	nucleus	0.52	4.55

Protein Annotations

EnsemblPlants:CDX89377	EnsemblPlantsGene:GSBRNA2T00149608001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CCT_domain
InterPro:IPR010402	PANTHER:PTHR31874	PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	ProteinID:CDX89377
ProteinID:CDX89377.1	SEG:seg	UniParc:UPI0004EE609F	MapMan:15.5.1.2	:	:

Description

BnaA01g15160D

Coordinates

chrLK031858:+:1229744..1231349

Molecular Weight (calculated)

42493.0 Da

IEP (calculated)

6.963

GRAVY (calculated)

-0.610

Length

382 amino acids

Sequence
(BLAST)

001: MSSCLSGGGA YTFELEMMKS PPSRTTASSS HNTPSPSSTI SESNSPPLAI SKRRPRTQRK RPNQTYDEAA ALLSTAYPNI FSSKRKSPLS PLFLSDYDEA
101: SQLLLPFAST EEPGFLFSPT TQTKQDQFLE HNEVSLVNRF GILEDFDAES ILDEEIEEGI NSFMGSIESN DGESGFAGID PLGEMTMLPW QGSSLGLRNS
201: LRECDDASLW MFPTVELEHI SPRIQTTITT AAADDGKPVD VSSSKSKTVA REEKKKKKKK VAAAAAADLK TEQRVSPFLK LDYDRVLEAW SDKESPFSDE
301: ILGSEAAGSD VHASLAEIDL FGESGMREAI VLRYKEKRRN RLFSNSKRIR YQVRKLNADQ RPRMKGRFVR RSNIRNLGGL RL

Best Arabidopsis Sequence Match ( AT4G25990.1 )
(BLAST)

001: MSSCAYSFEL EMMKSPPSNN TPSPSSTISE TNSPPFSIST RRPRTPRKRP NQTYDEAAAL LSTAYPKIFS SKKAKTQIFG TNKSPLSDYD EASQLLLPYV
101: SIEENEFLFN PTIPTKTEHF LEQKEVSFDD LEVNGFGVLD DFDAESILDE EIEEGIDSFM GNIESNDGDR ENCYRVGRLE EIMKNAWNGR FRLGLGLRSS
201: LRQNNDENWW KFPTVEFDQI SPRIQTTAAA AADDGQSNVV DSSKIKTIVT AEGDKKKKKK KKKKKVAPAA AESKSSEVTD SNPKLEQRVS PLLKLDYDGV
301: LEAWSGKESP FSDEILGSDA DGVDFHVRLG EIDLFGESGM REASVLRYKE KRRNRLFSKK IRYQVRKLNA DQRPRMKGRF VRRPNARNLS GLRL

Arabidopsis Description

CILCCT motif family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.