CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38274	Canola	nucleus, plastid	93.97	94.21
CDY42238	Canola	nucleus	73.62	75.91
CDY47926	Canola	nucleus	73.62	74.74
AT5G57180.2	Thale cress	nucleus, plastid	74.62	68.28
CDX89377	Canola	plastid	56.03	58.38
CDX94392	Canola	plastid	53.77	55.73
CDY42769	Canola	nucleus	32.16	54.94
CDX92740	Canola	plastid	54.77	54.91
VIT_11s0103g00760.t01	Wine grape	plastid	50.5	48.2
KRH02778	Soybean	nucleus, plastid	47.49	47.49
KRH19100	Soybean	nucleus	46.23	46.12
PGSC0003DMT400059170	Potato	plastid	47.49	43.75
Solyc07g008540.2.1	Tomato	nucleus, plastid	46.98	43.29
GSMUA_Achr6P01780_001	Banana	nucleus	40.95	39.76
GSMUA_Achr7P19660_001	Banana	mitochondrion	40.95	36.79
KRH37334	Soybean	nucleus, plastid	33.67	35.83
GSMUA_Achr10P...	Banana	nucleus	28.64	35.4
CDX77359	Canola	nucleus	13.82	34.38
CDX70561	Canola	nucleus	12.31	32.45
KRH12328	Soybean	plastid	31.66	31.9
EES04516	Sorghum	plastid	38.19	31.28
HORVU6Hr1G021460.2	Barley	plastid	36.93	30.0
TraesCS6D01G108000.1	Wheat	plastid	36.93	29.76
TraesCS6B01G146200.2	Wheat	plastid	36.93	29.76
Os02t0148000-01	Rice	plastid	35.18	29.72
TraesCS6A01G118000.1	Wheat	plastid	36.68	29.67
Zm00001d053880_P001	Maize	plastid	34.92	29.39
CDY15597	Canola	nucleus	14.32	29.08
Zm00001d015268_P001	Maize	plastid	33.92	28.6
CDY66177	Canola	nucleus	14.07	28.43
CDY10244	Canola	nucleus	14.07	27.72
CDY06672	Canola	nucleus	14.07	27.72
Os06t0699600-01	Rice	plastid	32.41	27.68
TraesCS7D01G414400.2	Wheat	plastid	31.16	27.13
TraesCS7A01G422200.1	Wheat	nucleus, plastid	30.9	26.86
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	19.85	26.78
TraesCS7B01G322600.1	Wheat	plastid	30.4	26.48
Zm00001d014664_P001	Maize	plastid	28.39	25.98
KXG20763	Sorghum	plastid	28.89	25.33
CDY07383	Canola	cytosol	14.32	24.78
CDY04230	Canola	nucleus	13.07	22.61
CDY03851	Canola	nucleus	20.35	21.77
CDY65591	Canola	nucleus	18.34	20.98
CDY51133	Canola	nucleus	19.85	20.95
CDX85600	Canola	nucleus	16.58	20.75
CDY53119	Canola	nucleus	19.6	20.74
CDY67920	Canola	nucleus	18.09	20.69
CDX91067	Canola	nucleus	16.58	20.43
CDX69586	Canola	nucleus, plastid	16.83	20.3
CDX78575	Canola	nucleus	15.08	19.93
CDY09849	Canola	nucleus	16.33	19.64
CDY66242	Canola	nucleus	15.33	19.43
CDY24402	Canola	nucleus	17.84	19.24
CDY44890	Canola	nucleus	18.84	18.7
CDX81527	Canola	nucleus	18.84	18.7
CDY36106	Canola	nucleus	15.08	15.62
CDY07382	Canola	nucleus	0.75	6.82
CDY04231	Canola	mitochondrion	0.75	6.82

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A078ITI0	InterPro:CCT_domain	EnsemblPlants:CDY52734	ProteinID:CDY52734	ProteinID:CDY52734.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00007676001	InterPro:IPR010402	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF10	UniParc:UPI0004EEDE56	SEG:seg	:	:	:

Description

BnaC09g53340DBnaC09g53340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITI0]

Coordinates

chrLK033123:-:32368..35685

Molecular Weight (calculated)

44616.6 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.762

Length

398 amino acids

Sequence
(BLAST)

001: MSACLSSGGG AAAYSFELEK KKSPPPPPPS SSTTTRATSP SSTISESSNS PLAISTRKPR TPRKRPNQTY NEAAALLSTA YPNLFSSSSN NLYSKRKTHP
101: NPHLYGFAAK SPLLSDNDDA SELLLESIEE PDFLFQARSE YFSELKEVNV NQFEFSDEFD AESILDEEIE EGIDSIMGIV ESNSGENRGH LISRLEQMMK
201: MNRIGFKFAG NFPLGLGLRS ALREHNDANW MRFHTVDFEQ ISPRIQSTVE EEKIESKKLI GEKSKKKKKK KVPAAAKTVP MTETCRDDTE EKSGQLMLKL
301: DYDGVLEAWS EKESPFSDEI LGSEAAGADV NARLAQINLF GDSGIREASV LRYKEKRRTR LFSKKIRYQV RKLNADQRPR MKGRFVRRPN VSPPSGQR

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.