CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19100	Soybean	nucleus	94.47	94.24
VIT_11s0103g00760.t01	Wine grape	plastid	62.31	59.47
PGSC0003DMT400059170	Potato	plastid	54.27	50.0
Solyc07g008540.2.1	Tomato	nucleus, plastid	54.02	49.77
CDY52734	Canola	nucleus, plastid	47.49	47.49
CDY38274	Canola	nucleus, plastid	47.24	47.36
CDY47926	Canola	nucleus	45.98	46.68
CDX89377	Canola	plastid	44.72	46.6
Bra013939.1-P	Field mustard	plastid	44.72	46.6
Bra020461.1-P	Field mustard	nucleus	45.98	46.45
CDY42238	Canola	nucleus	44.97	46.37
Bra002752.1-P	Field mustard	nucleus, plastid	44.97	45.55
CDX94392	Canola	plastid	43.47	45.05
GSMUA_Achr6P01780_001	Banana	nucleus	44.97	43.66
AT5G57180.2	Thale cress	nucleus, plastid	47.24	43.22
Bra019134.1-P	Field mustard	plastid	41.46	43.08
CDX92740	Canola	plastid	42.46	42.57
AT4G25990.2	Thale cress	nucleus	43.47	42.3
GSMUA_Achr10P...	Banana	nucleus	33.67	41.61
GSMUA_Achr7P19660_001	Banana	mitochondrion	43.72	39.28
KRH37334	Soybean	nucleus, plastid	36.68	39.04
CDY42769	Canola	nucleus	21.36	36.48
KRH12328	Soybean	plastid	35.93	36.2
EES04516	Sorghum	plastid	43.97	36.01
Zm00001d053880_P001	Maize	plastid	41.21	34.67
Os02t0148000-01	Rice	plastid	40.7	34.39
HORVU6Hr1G021460.2	Barley	plastid	41.71	33.88
TraesCS6D01G108000.1	Wheat	plastid	41.71	33.6
TraesCS6A01G118000.1	Wheat	plastid	41.46	33.54
TraesCS6B01G146200.2	Wheat	plastid	41.46	33.4
Zm00001d015268_P001	Maize	plastid	39.45	33.26
Os06t0699600-01	Rice	plastid	37.19	31.76
TraesCS7D01G414400.2	Wheat	plastid	34.42	29.98
TraesCS7A01G422200.1	Wheat	nucleus, plastid	34.42	29.91
TraesCS7B01G322600.1	Wheat	plastid	34.17	29.76
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	21.11	28.47
Zm00001d014664_P001	Maize	plastid	30.9	28.28
KXG20763	Sorghum	plastid	31.16	27.31
KRH17099	Soybean	nucleus	14.82	26.82
KRH72745	Soybean	nucleus	13.82	23.91
KRH60334	Soybean	nucleus	20.35	22.19
KRH41630	Soybean	nucleus	19.6	21.02
KRH48479	Soybean	nucleus	21.11	19.67
KRH35955	Soybean	nucleus	20.6	19.57
KRH07084	Soybean	plastid	17.34	19.49
KRG90815	Soybean	nucleus	19.6	18.66
KRG94369	Soybean	plastid	15.83	17.8
KRH39195	Soybean	nucleus	20.35	16.88
KRH13468	Soybean	cytosol	3.77	15.15

Protein Annotations

EntrezGene:100810303	MapMan:15.5.1.2	EMBL:ACUP02010323	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_17G059100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:I1MSL3	InterPro:IPR010402	EnsemblPlants:KRH02778	ProteinID:KRH02778	ProteinID:KRH02778.1	PFAM:PF06203
PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF10	UniParc:UPI000233E095	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:4486593..4490466

Molecular Weight (calculated)

44168.0 Da

IEP (calculated)

9.791

GRAVY (calculated)

-0.677

Length

398 amino acids

Sequence
(BLAST)

001: MSSSCLSGAG GRTYGFDFEF VKSPSSSTFT SHTSSSPSST ISESSNSPLA ISTKKPRTPR KRPNQTYNEA AALLSTAYPN LFSTKNLKTQ GKGKGKFSRP
101: TSENFDYDSS ELLLPFRVFD GTASCFLLDQ TGPKPMERPK VVSVQEKDNN NKACESPGEI SSIVNFNSVE LNDDGEESLD AESILDEEIE EGIDSIMGSS
201: IQEVSNDAVS NLPWILPFGG KLEFPRPRVR ALRHVDDGNW WNFPAVDILS ISPKINTKPP PVAAEKKMKK KKVAAAPSPV VLELKNTELP KPKQGLMLKL
301: DYDGVRNAWS DSGTPFTDDS PLADVPENDV TARLSQIDLL WDNGGVREAS VLRYKEKRRT RLFSKKIRYQ VRKVNADRRP RMKGRFVRRL NSSSNAHR

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.