CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73870.1	KRG99257	AT1G60010.1	21798944
AT1G73870.1	KRH45741	AT1G60010.1	21798944
AT1G73870.1	KRH69484	AT1G60010.1	21798944
AT1G73870.1	KRH74672	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48479	Soybean	nucleus	76.46	85.95
KRH13468	Soybean	cytosol	13.75	66.67
KRH60334	Soybean	nucleus	49.38	64.93
KRH41630	Soybean	nucleus	47.29	61.19
PGSC0003DMT400014362	Potato	nucleus	39.58	47.38
Solyc03g119540.2.1	Tomato	nucleus	39.17	46.08
KRH35955	Soybean	nucleus	38.12	43.68
KRG90815	Soybean	nucleus	36.67	42.11
AT1G73870.1	Thale cress	nucleus	32.29	39.54
KRH17099	Soybean	nucleus	13.33	29.09
KRH72745	Soybean	nucleus	12.08	25.22
KRH07084	Soybean	plastid	15.42	20.9
KRH02778	Soybean	nucleus, plastid	16.88	20.35
KRH19100	Soybean	nucleus	16.67	20.05
KRG94369	Soybean	plastid	14.58	19.77
KRH37334	Soybean	nucleus, plastid	15.0	19.25
KRH12328	Soybean	plastid	13.12	15.95

Protein Annotations

MapMan:15.5.1.2	EMBL:ACUP02005924	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_09G184600	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
InterPro:IPR000315	InterPro:IPR010402	UniProt:K7M1Z5	ProteinID:KRH39194.1	EnsemblPlants:KRH39195	ProteinID:KRH39195
ProteinID:KRH39195.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF19	SMART:SM00336	UniParc:UPI000295EE4C	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:40985849..40988386

Molecular Weight (calculated)

53916.2 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.515

Length

480 amino acids

Sequence
(BLAST)

001: MTNEMKEASA LGARTARACE SCLKVRARWY CAADDAFLCH GCDNMVHSAN QLASRHERVK LQTASSKVNY SVTPKVAWHS GFTRKARTPR SNNKHSSLQQ
101: QQQKPLHEEQ GEEEEVFFNN TIISVQPLVP ELGSEEPLLN DETEEQLLCR VPVFDAELCS IYNEVKDEVN VAGGEVAFDL ENFSSEFLPT DMDLAEFSAD
201: VESLLGNGVD EDSPVKKGSE LVLLDCKEEG DDEMDACVNG IGANKDAMVK VKDEEELDAD DDTACHLDSI LDMNSEAFNW NIAESESPAQ AQEDEVSKVG
301: TNKKDIFLRL NYEEVITAWA SQGSPWTTGT PPKFFNSDDC WLDLFSYSII ADLIYIWLKE EGCVASSVTD VKFVDIPEII RRAEMCYAFG NQCKGSNGGG
401: VQCYYGEVRS LRVHADGGRE ARVSRYREKR RTRLFAKKIR YEVRKLNAEK RPRMKGRFVK SVPLLEPLLC QLNYQSSPLT

Best Arabidopsis Sequence Match ( AT1G68520.1 )
(BLAST)

001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH

Arabidopsis Description

COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.