CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	KRG99257	AT1G60010.1	21798944
AT1G68520.1	KRH45741	AT1G60010.1	21798944
AT1G68520.1	KRH69484	AT1G60010.1	21798944
AT1G68520.1	KRH74672	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04231	Canola	mitochondrion	24.24	54.55
KRH41630	Soybean	nucleus	79.8	21.29
KRH60334	Soybean	nucleus	77.78	21.1
KRH48479	Soybean	nucleus	67.68	15.69
CDY67920	Canola	nucleus	54.55	15.52
CDY65591	Canola	nucleus	54.55	15.52
CDY03851	Canola	nucleus	56.57	15.05
CDY51133	Canola	nucleus	56.57	14.85
GSMUA_Achr10P...	Banana	nucleus	50.51	14.24
GSMUA_Achr4P30670_001	Banana	nucleus	52.53	14.17
CDY53119	Canola	nucleus	53.54	14.1
KRH39195	Soybean	nucleus	66.67	13.75
Bra012475.1-P	Field mustard	nucleus	56.57	13.73
AT1G68520.1	Thale cress	nucleus	55.56	13.55
AT1G25440.1	Thale cress	nucleus	56.57	13.43
CDX81527	Canola	nucleus	53.54	13.22
Bra024750.1-P	Field mustard	nucleus	54.55	13.04
CDY44890	Canola	nucleus	52.53	12.97
Solyc04g007210.2.1	Tomato	nucleus	55.56	12.85
GSMUA_Achr10P...	Banana	nucleus	49.49	12.83
CDY24402	Canola	nucleus	47.47	12.74
GSMUA_Achr7P18710_001	Banana	plastid	48.48	12.66
Bra033925.1-P	Field mustard	nucleus	50.51	12.47
KRH35955	Soybean	nucleus	52.53	12.41
GSMUA_Achr7P12560_001	Banana	nucleus	40.4	12.01
KRG90815	Soybean	nucleus	49.49	11.72
Zm00001d037327_P001	Maize	mitochondrion, nucleus	52.53	11.5
Bra004035.1-P	Field mustard	nucleus	54.55	11.39
Os02t0731700-02	Rice	nucleus	51.52	11.28
TraesCS6A01G293200.1	Wheat	nucleus	48.48	11.27
TraesCS6B01G323400.1	Wheat	nucleus	48.48	11.21
CDY36106	Canola	nucleus	43.43	11.2
TraesCS7A01G206200.1	Wheat	nucleus	48.48	11.11
TraesCS7B01G113400.1	Wheat	nucleus	48.48	11.11
TraesCS7D01G209000.1	Wheat	nucleus	48.48	11.11
TraesCS6D01G274100.1	Wheat	nucleus	48.48	11.06
Os03t0711100-01	Rice	plastid	46.46	10.93
Os06t0264200-00	Rice	plastid	52.53	10.81
Zm00001d045661_P001	Maize	nucleus	49.49	10.75
HORVU4Hr1G007420.1	Barley	nucleus, plastid	44.44	10.73
TraesCS4D01G046200.1	Wheat	nucleus, plastid	44.44	10.73
TraesCS4A01G268500.1	Wheat	nucleus, plastid	44.44	10.73
TraesCS4B01G045700.1	Wheat	nucleus, plastid	44.44	10.71
Zm00001d013443_P001	Maize	plastid	44.44	10.65
Bra010994.1-P	Field mustard	nucleus	43.43	10.57
EER88191	Sorghum	nucleus, plastid	50.51	10.55
Zm00001d017939_P001	Maize	nucleus	48.48	10.32
EER93585	Sorghum	plastid	43.43	10.24
EES05581	Sorghum	nucleus, plastid	48.48	9.84
PGSC0003DMT400020030	Potato	nucleus	55.56	9.77
HORVU6Hr1G073170.1	Barley	nucleus	48.48	9.64
Zm00001d033719_P001	Maize	plastid	44.44	9.34
KRH37334	Soybean	nucleus, plastid	16.16	4.28
KRH02778	Soybean	nucleus, plastid	15.15	3.77
KRH19100	Soybean	nucleus	14.14	3.51
KRH12328	Soybean	plastid	13.13	3.29
KRH17099	Soybean	nucleus	6.06	2.73
KRH72745	Soybean	nucleus	6.06	2.61
CDX77359	Canola	nucleus	4.04	2.5
KRH07084	Soybean	plastid	8.08	2.26
KRG94369	Soybean	plastid	8.08	2.26
CDY04230	Canola	nucleus	4.04	1.74

Protein Annotations

EMBL:ACUP02009736	EnsemblPlants:KRH13468	EnsemblPlantsGene:GLYMA_15G241200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31874
PANTHER:PTHR31874:SF19	ProteinID:KRH13468	ProteinID:KRH13468.1	SMART:SM00336	UniParc:UPI000294D0C5	UniProt:K7MDJ9
MapMan:15.5.1.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:45840499..45841175

Molecular Weight (calculated)

11005.0 Da

IEP (calculated)

10.372

GRAVY (calculated)

-0.425

Length

99 amino acids

Sequence
(BLAST)

1: MKVAGALGAK TALACDSCVS RRPRWFCAAD DAFLCHASNT LVHSANQLAS THERAQLQTA SSKVMTNTTH GWHSGFTSKA RTPRHNREEY RLIFWTKLS

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.