Factsheet for Zm00001d033719_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017998_P001
Zm00001d020348_P001
Zm00001d032324_P001
Zm00001d037251_P001
Zm00001d044783_P001
Zm00001d052277_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Zm00001d017998_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d020348_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d032324_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d037251_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d044783_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d052277_P001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013443_P001	Maize	plastid	74.52	84.99
EER93585	Sorghum	plastid	75.16	84.29
Os03t0711100-01	Rice	plastid	64.12	71.73
TraesCS4A01G268500.1	Wheat	nucleus, plastid	60.08	69.02
TraesCS4B01G045700.1	Wheat	nucleus, plastid	59.87	68.61
TraesCS4D01G046200.1	Wheat	nucleus, plastid	59.66	68.54
HORVU4Hr1G007420.1	Barley	nucleus, plastid	58.39	67.07
CDY04231	Canola	mitochondrion	4.88	52.27
KRH13468	Soybean	cytosol	9.34	44.44
CDY65591	Canola	nucleus	29.94	40.52
CDY67920	Canola	nucleus	29.72	40.23
CDX77359	Canola	nucleus	13.59	40.0
CDY03851	Canola	nucleus	30.57	38.71
VIT_01s0011g03520.t01	Wine grape	nucleus	35.03	38.19
CDY24402	Canola	nucleus	29.51	37.67
KRH35955	Soybean	nucleus	33.33	37.47
CDY53119	Canola	nucleus	29.72	37.23
CDY51133	Canola	nucleus	29.51	36.87
KRG90815	Soybean	nucleus	32.06	36.12
Zm00001d037327_P001	Maize	mitochondrion, nucleus	34.61	36.06
Bra024750.1-P	Field mustard	nucleus	31.42	35.75
AT1G25440.1	Thale cress	nucleus	31.21	35.25
Zm00001d045661_P001	Maize	nucleus	33.97	35.09
Bra012475.1-P	Field mustard	nucleus	30.36	35.05
Solyc04g007210.2.1	Tomato	nucleus	31.85	35.05
CDY44890	Canola	nucleus	29.3	34.41
CDX81527	Canola	nucleus	29.3	34.41
Zm00001d017939_P001	Maize	nucleus	33.76	34.19
AT1G68520.1	Thale cress	nucleus	29.3	33.99
Bra033925.1-P	Field mustard	nucleus	28.87	33.92
CDY04230	Canola	nucleus	16.56	33.91
PGSC0003DMT400037755	Potato	nucleus	31.42	33.11
Solyc05g009310.2.1	Tomato	nucleus	30.36	32.72
CDY36106	Canola	nucleus	25.69	31.51
Bra010994.1-P	Field mustard	nucleus	26.33	30.47
Bra004035.1-P	Field mustard	nucleus	30.36	30.17
PGSC0003DMT400020030	Potato	nucleus	30.15	25.22
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	11.68	20.3
Zm00001d035134_P001	Maize	plastid	10.62	18.73
Zm00001d053880_P001	Maize	plastid	16.99	16.91
Zm00001d015268_P001	Maize	plastid	15.29	15.25
Zm00001d014664_P001	Maize	plastid	12.74	13.79

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A1D6L1R1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	ProteinID:ONM08464.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31874	PANTHER:PTHR31874:SF20	SMART:SM00336	UniParc:UPI000843AF0A	EnsemblPlantsGene:Zm00001d033719	EnsemblPlants:Zm00001d033719_P001
EnsemblPlants:Zm00001d033719_T001	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

C2C2-CO-like-transcription factor 2Zinc finger protein CONSTANS-LIKE 7

Coordinates

chr1:+:272190270..272192279

Molecular Weight (calculated)

51871.2 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.662

Length

471 amino acids

Sequence
(BLAST)

001: MTNAGAATGA ALGARTARSC DSCMRRRARW HCPADNAFLC QSCDVSVHSA NPLARRHHRV RLPSASCSSP PRDPDAPTWL HGLKRRPRTP RSKPGGSNKH
101: EAAPSSIAAA ASAAVPDLEA EAEAEAEESG SGILGDNDDD HGFQDDDENL LYCVPVFDPM LAEFYNPVAD EGEQKPACLM LPLVETSPEF ASGGLAEADG
201: LSGFDVPDMD LASFAADMES LLMGVDDGFD DLGFLDEQKP QVNADVDLEA MAAPEPERED KKRKRDGFDY LGFLDEEKPQ VNADVDLEAM VAPEPEREDK
301: KRKRTDMILK LNYEGVIASW VRDGGSPWYH GERPHLDDPY ELWLEFPATG SRGLFGGTMT AVTGGEREAR VSRYREKRRR RLFAKKIRYE VRKLNAEKRP
401: RMKGRFVKRT TLPPLPRPPP PSQQQQKKKQ LPRSLPHVGM RALVPVTVPA GTSAQGRGAL AHIFRLAIST N

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.