Factsheet for HORVU4Hr1G007420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G013820.4
HORVU5Hr1G059690.7
HORVU6Hr1G076380.4
HORVU7Hr1G039360.7
HORVU7Hr1G039390.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	HORVU2Hr1G013820.4	AT1G60010.1	21798944
AT1G68520.1	HORVU5Hr1G059690.7	AT1G60010.1	21798944
AT1G68520.1	HORVU6Hr1G076380.4	AT1G60010.1	21798944
AT1G68520.1	HORVU7Hr1G039360.7	AT1G60010.1	21798944
AT1G68520.1	HORVU7Hr1G039390.1	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G045700.1	Wheat	nucleus, plastid	95.61	95.38
TraesCS4D01G046200.1	Wheat	nucleus, plastid	95.12	95.12
TraesCS4A01G268500.1	Wheat	nucleus, plastid	94.63	94.63
Os03t0711100-01	Rice	plastid	72.44	70.55
EER93585	Sorghum	plastid	68.78	67.14
Zm00001d013443_P001	Maize	plastid	66.1	65.62
Zm00001d033719_P001	Maize	plastid	67.07	58.39
CDY04231	Canola	mitochondrion	5.85	54.55
KRH13468	Soybean	cytosol	10.73	44.44
CDY65591	Canola	nucleus	35.37	41.67
CDY67920	Canola	nucleus	35.12	41.38
CDX77359	Canola	nucleus	15.85	40.62
CDY03851	Canola	nucleus	35.85	39.52
KRH35955	Soybean	nucleus	39.76	38.9
CDY53119	Canola	nucleus	35.61	38.83
VIT_01s0011g03520.t01	Wine grape	nucleus	40.49	38.43
CDY51133	Canola	nucleus	35.12	38.2
KRG90815	Soybean	nucleus	38.78	38.04
CDY04230	Canola	nucleus	20.73	36.96
Bra024750.1-P	Field mustard	nucleus	37.07	36.72
Solyc05g009310.2.1	Tomato	nucleus	38.78	36.38
PGSC0003DMT400037755	Potato	nucleus	39.51	36.24
Solyc04g007210.2.1	Tomato	nucleus	37.56	35.98
AT1G25440.1	Thale cress	nucleus	36.59	35.97
CDY44890	Canola	nucleus	35.12	35.91
CDX81527	Canola	nucleus	35.12	35.91
Bra012475.1-P	Field mustard	nucleus	35.61	35.78
CDY24402	Canola	nucleus	32.2	35.77
AT1G68520.1	Thale cress	nucleus	35.12	35.47
Bra033925.1-P	Field mustard	nucleus	34.63	35.41
HORVU6Hr1G073170.1	Barley	nucleus	39.02	32.13
HORVU2Hr1G056960.1	Barley	peroxisome	8.05	31.43
Bra004035.1-P	Field mustard	nucleus	35.12	30.38
CDY36106	Canola	nucleus	27.56	29.43
Bra010994.1-P	Field mustard	nucleus	28.54	28.75
PGSC0003DMT400020030	Potato	nucleus	34.63	25.22
HORVU6Hr1G021460.2	Barley	plastid	20.24	16.94
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	11.46	15.93
HORVU7Hr1G074960.1	Barley	nucleus	6.59	11.95
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	8.29	11.41

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A287N3B7	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:HORVU4Hr1G007420
EnsemblPlants:HORVU4Hr1G007420.1	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF20	SMART:SM00336	UniParc:UPI000B47C8D5	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:19477279..19479374

Molecular Weight (calculated)

44833.6 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.578

Length

410 amino acids

Sequence
(BLAST)

001: MASAGAAIGA RAARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLPS SSSPAATSSL QHADPDEPAW VHGLKRRPRT PRSKPGTVSK
101: HCAPAKASAA SAVPDLEAED SGSGIVGDND DGHGVEVEDE DLLYRVPVFD PMLAELYNPM PVDDFREPLE QKPAVCCFSS LACQPSSDYA SGVAGAADGF
201: TGFDVVPDME LASFAADMES LLMGGVEEGY DDLRFLDEEK PQLNLDFDMA DFDDQSQSAA PAPEQELEDR KRKRSDSGMI LKLDYERVID SWAHDGGSPW
301: FYGERPHIDP TDDSWLDMPA GSRGFGLGAA VTAVTGGERE ARVSRYREKR RTRLFAKKIR YEVRKLNAEK RPRMKGRFVK RTALPPLPPR PPMVLAAAPG
401: HGGAHGRFRF

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.