Factsheet for Bra033925.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027820.1-P
Bra035410.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Bra027820.1-P	AT1G60010.1	21798944
AT1G68520.1	Bra035410.1-P	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81527	Canola	nucleus	97.76	97.76
CDY44890	Canola	nucleus	97.51	97.51
AT1G68520.1	Thale cress	nucleus	76.31	75.37
Bra004035.1-P	Field mustard	nucleus	77.31	65.4
Bra012475.1-P	Field mustard	nucleus	59.1	58.09
Bra024750.1-P	Field mustard	nucleus	58.6	56.76
KRH13468	Soybean	cytosol	12.47	50.51
VIT_01s0011g03520.t01	Wine grape	nucleus	46.88	43.52
KRH35955	Soybean	nucleus	44.39	42.48
KRG90815	Soybean	nucleus	43.89	42.11
GSMUA_Achr10P...	Banana	nucleus	39.9	41.88
GSMUA_Achr4P30670_001	Banana	nucleus	37.66	41.14
GSMUA_Achr7P18710_001	Banana	plastid	38.4	40.63
GSMUA_Achr7P12560_001	Banana	nucleus	33.42	40.24
Solyc04g007210.2.1	Tomato	nucleus	42.89	40.19
GSMUA_Achr10P...	Banana	nucleus	34.41	39.32
Solyc05g009310.2.1	Tomato	nucleus	41.4	37.99
TraesCS7D01G209000.1	Wheat	nucleus	40.65	37.73
TraesCS7A01G206200.1	Wheat	nucleus	40.4	37.5
TraesCS7B01G113400.1	Wheat	nucleus	39.9	37.04
Zm00001d037327_P001	Maize	mitochondrion, nucleus	41.15	36.5
PGSC0003DMT400037755	Potato	nucleus	40.65	36.47
Zm00001d045661_P001	Maize	nucleus	40.9	35.96
TraesCS6D01G274100.1	Wheat	nucleus	38.4	35.48
TraesCS6A01G293200.1	Wheat	nucleus	37.66	35.45
Bra010994.1-P	Field mustard	nucleus	35.91	35.38
TraesCS6B01G323400.1	Wheat	nucleus	37.66	35.28
Os02t0731700-02	Rice	nucleus	39.4	34.96
EER88191	Sorghum	nucleus, plastid	41.15	34.81
HORVU4Hr1G007420.1	Barley	nucleus, plastid	35.41	34.63
TraesCS4D01G046200.1	Wheat	nucleus, plastid	35.16	34.39
TraesCS4A01G268500.1	Wheat	nucleus, plastid	35.16	34.39
TraesCS4B01G045700.1	Wheat	nucleus, plastid	34.91	34.06
Os06t0264200-00	Rice	plastid	40.15	33.47
Os03t0711100-01	Rice	plastid	34.91	33.25
Zm00001d017939_P001	Maize	nucleus	38.4	33.12
EES05581	Sorghum	nucleus, plastid	39.9	32.79
Zm00001d013443_P001	Maize	plastid	33.67	32.69
EER93585	Sorghum	plastid	33.67	32.14
HORVU6Hr1G073170.1	Barley	nucleus	37.91	30.52
Bra032273.1-P	Field mustard	nucleus	23.19	29.62
Zm00001d033719_P001	Maize	plastid	33.92	28.87
Bra023461.1-P	Field mustard	cytosol	10.97	28.76
PGSC0003DMT400020030	Potato	nucleus	39.4	28.06
Bra015548.1-P	Field mustard	nucleus	13.47	26.6
Bra006252.1-P	Field mustard	nucleus	15.71	20.93
Bra020461.1-P	Field mustard	nucleus	18.45	18.78
Bra013939.1-P	Field mustard	plastid	17.46	18.32
Bra019134.1-P	Field mustard	plastid	17.46	18.28
Bra002752.1-P	Field mustard	nucleus, plastid	17.21	17.56
Bra008763.1-P	Field mustard	nucleus, plastid	16.21	12.15
Bra023462.1-P	Field mustard	nucleus	4.24	10.69

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra033925	EnsemblPlants:Bra033925.1	EnsemblPlants:Bra033925.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4EYN3	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI00025462D2
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT1G68520 (E=1e-155) | zinc finger (B-box type) family protein

Coordinates

chrA02:-:10904297..10905715

Molecular Weight (calculated)

45587.8 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.721

Length

401 amino acids

Sequence
(BLAST)

001: MMKNSANVVG GKTARACDSC LKRRARWYCA ADDAFLCHSC DGSIHSANPL ARRHERVLLK SASPGKQRHD SSSPPHPPTW HQGFTRKART RRGGKKSHTM
101: IFHDLVPEMS SEDQSFEVEE QLIFEVPVLN PMCHEKCLNE SMETKIELPL MSMCFKGSDE EDDNAESCLN GLFPTDTELA QFSADVEILL GGGTDREYNM
201: EELGLGEMLK VEKEEVEEEE EVATIEVCDL DAADEITPFV ISFEYEYSQK TNLEEEDEKQ DVENNMIDVG VNEMSCSIKE EKNEKVHMLR LDYESVISTW
301: GGQGTPWTAR ETPQIDLNML CCPTDSMVES GGEAHHHNYV RGLGLHMGEA GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSIAAA
401: H

Best Arabidopsis Sequence Match ( AT1G68520.1 )
(BLAST)

001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH

Arabidopsis Description

COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.