Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra026434.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G60010.1 | Bra026434.1-P | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24507 | Canola | cytosol | 100.0 | 100.0 |
| AT1G60010.1 | Thale cress | cytosol | 81.14 | 82.08 |
| Bra027820.1-P | Field mustard | cytosol | 71.43 | 70.62 |
| Bra031717.1-P | Field mustard | cytosol | 56.0 | 59.04 |
| Solyc05g006030.2.1 | Tomato | cytosol | 50.86 | 53.61 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 53.14 | 53.14 |
| KRH69484 | Soybean | cytosol | 52.0 | 52.91 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 49.71 | 52.73 |
| KRH74672 | Soybean | cytosol | 51.43 | 52.33 |
| KRH45741 | Soybean | cytosol | 48.57 | 48.3 |
| KRG99257 | Soybean | cytosol | 48.0 | 48.28 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 34.86 | 44.53 |
| Bra010130.1-P | Field mustard | nucleus | 40.57 | 44.38 |
| KXG30786 | Sorghum | cytosol | 42.29 | 44.05 |
| Bra000609.1-P | Field mustard | cytosol | 37.71 | 42.04 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 40.0 | 41.92 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 37.14 | 40.12 |
| Bra035874.1-P | Field mustard | cytosol | 38.29 | 40.12 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 39.43 | 39.2 |
| Zm00001d017998_P001 | Maize | cytosol | 38.29 | 38.73 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 36.57 | 38.55 |
| TraesCS7A01G192700.1 | Wheat | cytosol | 36.57 | 38.32 |
| KXG19676 | Sorghum | cytosol | 37.71 | 37.93 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 39.43 | 37.91 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 38.86 | 37.78 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 38.86 | 37.78 |
| Zm00001d052277_P001 | Maize | cytosol | 36.0 | 37.5 |
| TraesCS6A01G309500.1 | Wheat | cytosol | 38.29 | 37.22 |
| Os06t0236300-01 | Rice | cytosol | 40.0 | 37.04 |
| Zm00001d020348_P001 | Maize | cytosol | 38.86 | 36.96 |
| EER96686 | Sorghum | cytosol | 37.14 | 36.31 |
| Os02t0741700-01 | Rice | cytosol | 34.29 | 36.14 |
| OQU80443 | Sorghum | cytosol | 37.14 | 35.14 |
| Zm00001d044783_P001 | Maize | cytosol | 34.86 | 35.06 |
| Zm00001d032324_P001 | Maize | cytosol | 37.14 | 34.95 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 36.57 | 34.59 |
| TraesCS5A01G200100.1 | Wheat | cytosol | 38.86 | 34.52 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 33.71 | 34.3 |
| Zm00001d037251_P001 | Maize | cytosol | 35.43 | 34.25 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 38.86 | 34.0 |
| Os09t0381600-01 | Rice | cytosol | 40.0 | 33.65 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 38.29 | 33.5 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 38.86 | 33.5 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 36.0 | 33.33 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 37.71 | 33.0 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 30.86 | 32.53 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 37.14 | 32.18 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 36.57 | 31.68 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 31.43 | 31.61 |
| TraesCS2A01G084700.1 | Wheat | cytosol | 36.0 | 31.5 |
| TraesCS2A01G084600.1 | Wheat | cytosol | 34.86 | 30.81 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 34.29 | 30.77 |
| HORVU2Hr1G013820.4 | Barley | cytosol | 35.43 | 30.69 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 34.86 | 30.5 |
| TraesCS2B01G099100.1 | Wheat | nucleus | 34.86 | 30.5 |
| TraesCS2A01G084400.1 | Wheat | cytosol | 34.86 | 30.5 |
| TraesCS2A01G084500.1 | Wheat | cytosol | 35.43 | 30.24 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 34.29 | 30.15 |
| TraesCS2B01G099200.1 | Wheat | nucleus | 33.71 | 29.5 |
| Bra037835.1-P | Field mustard | nucleus | 29.14 | 28.18 |
| Bra024434.1-P | Field mustard | nucleus | 24.57 | 26.06 |
| Bra031842.1-P | Field mustard | nucleus | 28.0 | 25.65 |
| TraesCS2B01G098900.1 | Wheat | nucleus, plastid | 22.86 | 22.1 |
Protein Annotations
| EnsemblPlants:Bra035410.1 | EnsemblPlants:Bra035410.1-P | EnsemblPlantsGene:Bra035410 | InterPro:DUF4228_plant | ncoils:Coil | PANTHER:PTHR33413 |
| PANTHER:PTHR33413:SF4 | PFAM:PF14009 | UniParc:UPI0002544AB1 | UniProt:M4F2W0 | MapMan:35.2 | : |
Description
AT1G60010 (E=3e-079) | unknown protein
Coordinates
chrA01:-:16539794..16540599
Molecular Weight (calculated)
19771.8 Da
IEP (calculated)
10.288
GRAVY (calculated)
-0.795
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV AEIMRMHPGH YVSLIIPLPE ADIPAKTRAE EEDGKSQKRV VKFTRVKLLR PTENLVLGHA YRLITSQEVM
101: KVIRAKKYAK TKKHHNETTR EKKKPSLEKK VDEVSDKHQN LETNDEKQRA VLTSSGSSKS KTWRPSLQSI SETTS
101: KVIRAKKYAK TKKHHNETTR EKKKPSLEKK VDEVSDKHQN LETNDEKQRA VLTSSGSSKS KTWRPSLQSI SETTS
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.