Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G339300.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6A01G309500.1 | Wheat | cytosol | 81.67 | 81.67 |
| KXG30786 | Sorghum | cytosol | 68.33 | 73.21 |
| Zm00001d017998_P001 | Maize | cytosol | 66.67 | 69.36 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 63.33 | 66.28 |
| Zm00001d052277_P001 | Maize | cytosol | 61.11 | 65.48 |
| Os02t0741700-01 | Rice | cytosol | 57.22 | 62.05 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 55.0 | 61.11 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 45.0 | 59.12 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 50.0 | 51.14 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 47.22 | 50.9 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 48.89 | 48.35 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 47.78 | 46.49 |
| KRH74672 | Soybean | cytosol | 41.11 | 43.02 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 47.22 | 42.71 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 41.11 | 42.29 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 46.67 | 42.0 |
| KRG99257 | Soybean | cytosol | 40.56 | 41.95 |
| KRH69484 | Soybean | cytosol | 40.0 | 41.86 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 46.11 | 41.5 |
| Bra000609.1-P | Field mustard | cytosol | 36.11 | 41.4 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 44.44 | 41.03 |
| AT5G50090.1 | Thale cress | cytosol | 36.11 | 40.88 |
| Solyc06g071320.2.1 | Tomato | cytosol | 35.0 | 40.65 |
| KRH45741 | Soybean | cytosol | 39.44 | 40.34 |
| AT1G60010.1 | Thale cress | cytosol | 38.33 | 39.88 |
| Solyc05g006030.2.1 | Tomato | cytosol | 36.67 | 39.76 |
| PGSC0003DMT400063216 | Potato | cytosol | 41.11 | 39.57 |
| CDY21433 | Canola | cytosol | 34.44 | 39.49 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 36.11 | 39.39 |
| CDY69854 | Canola | cytosol | 38.33 | 39.2 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 36.11 | 39.16 |
| AT5G62900.1 | Thale cress | cytosol | 35.0 | 39.13 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 43.89 | 39.11 |
| Solyc03g114020.2.1 | Tomato | cytosol | 40.56 | 39.04 |
| CDY24507 | Canola | cytosol | 37.78 | 38.86 |
| Bra035410.1-P | Field mustard | cytosol | 37.78 | 38.86 |
| PGSC0003DMT400083024 | Potato | cytosol | 34.44 | 38.51 |
| KRH03351 | Soybean | cytosol | 38.89 | 38.46 |
| KRH57030 | Soybean | cytosol | 38.33 | 38.33 |
| Bra010130.1-P | Field mustard | nucleus | 33.89 | 38.12 |
| CDY00334 | Canola | nucleus | 33.89 | 38.12 |
| CDX84364 | Canola | cytosol | 33.89 | 38.12 |
| CDY30923 | Canola | cytosol | 37.22 | 37.85 |
| Bra027820.1-P | Field mustard | cytosol | 37.22 | 37.85 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 38.33 | 37.5 |
| CDY70563 | Canola | cytosol | 37.22 | 37.43 |
| KRH63480 | Soybean | cytosol | 35.0 | 36.42 |
| Bra031717.1-P | Field mustard | cytosol | 33.33 | 36.14 |
| CDY34887 | Canola | cytosol | 33.33 | 36.14 |
| CDY07805 | Canola | nucleus | 32.78 | 35.54 |
| KRH54436 | Soybean | cytosol | 34.44 | 34.25 |
| Bra035874.1-P | Field mustard | cytosol | 31.11 | 33.53 |
| CDX87268 | Canola | cytosol | 28.89 | 32.5 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 37.22 | 29.65 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G288900.1 | EnsemblPlantsGene:TraesCS6D01G288900 | InterPro:DUF4228_plant | ncoils:Coil | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF6 |
| PFAM:PF14009 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:399759391..399760621
Molecular Weight (calculated)
19880.3 Da
IEP (calculated)
7.772
GRAVY (calculated)
-0.788
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEVA AAVVQHPGGR VERLYWSTPA AEVMRANPGH YVALVTLRVA EERQDADGGG ARRTVRLTRV KLLKPKETLL LGHVYRLITA NEVTKAVQAR
101: KEEKLRKARQ QLQQLESSTR QSKLRPAADG DDVDDDDDEA SLDESLDQLA RQDGGDGHRS SGARHRQWRP SLHSIDEAAS
101: KEEKLRKARQ QLQQLESSTR QSKLRPAADG DDVDDDDDEA SLDESLDQLA RQDGGDGHRS SGARHRQWRP SLHSIDEAAS
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.