Factsheet for PGSC0003DMT400083024

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071320.2.1	Tomato	cytosol	70.81	73.55
PGSC0003DMT400063216	Potato	cytosol	53.42	45.99
AT5G50090.1	Thale cress	cytosol	45.34	45.91
KRH63480	Soybean	cytosol	48.45	45.09
KRH03351	Soybean	cytosol	49.07	43.41
KRH57030	Soybean	cytosol	48.45	43.33
KRH54436	Soybean	cytosol	48.45	43.09
Bra000609.1-P	Field mustard	cytosol	40.99	42.04
CDY21433	Canola	cytosol	40.99	42.04
GSMUA_Achr5P23980_001	Banana	cytosol	35.4	41.61
VIT_17s0000g07840.t01	Wine grape	cytosol	47.2	41.3
PGSC0003DMT400040233	Potato	mitochondrion	42.24	41.21
Bra010130.1-P	Field mustard	nucleus	37.89	38.12
CDX84364	Canola	cytosol	37.89	38.12
CDY00334	Canola	nucleus	37.89	38.12
AT5G62900.1	Thale cress	cytosol	37.89	37.89
KXG30786	Sorghum	cytosol	38.51	36.9
Bra035874.1-P	Field mustard	cytosol	37.89	36.53
GSMUA_Achr9P28200_001	Banana	cytosol	37.27	35.93
Zm00001d017998_P001	Maize	cytosol	38.51	35.84
EER96686	Sorghum	cytosol	39.75	35.75
GSMUA_Achr9P18270_001	Banana	cytosol	40.37	35.71
KXG19676	Sorghum	cytosol	38.51	35.63
TraesCS7D01G194000.1	Wheat	cytosol	34.78	34.57
TraesCS6B01G339300.1	Wheat	cytosol	38.51	34.44
TraesCS6D01G288900.1	Wheat	cytosol	38.51	34.44
TraesCS6A01G309500.1	Wheat	cytosol	37.89	33.89
CDX87268	Canola	cytosol	33.54	33.75
TraesCS7B01G098100.1	Wheat	cytosol	34.78	33.73
Zm00001d020348_P001	Maize	cytosol	38.51	33.7
TraesCS7A01G192700.1	Wheat	cytosol	34.78	33.53
GSMUA_Achr3P06040_001	Banana	cytosol	36.65	33.52
OQU80443	Sorghum	cytosol	38.51	33.51
TraesCS5D01G205700.1	Wheat	cytosol	41.61	33.5
Os08t0420700-01	Rice	cytosol, nucleus, plastid	39.13	33.33
TraesCS5B01G198500.1	Wheat	cytosol	40.99	33.0
TraesCS5B01G198400.1	Wheat	cytosol	40.99	33.0
Zm00001d032324_P001	Maize	cytosol	37.89	32.8
Zm00001d037251_P001	Maize	cytosol	36.65	32.6
TraesCS5A01G200100.1	Wheat	cytosol	39.75	32.49
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	37.27	32.43
Os06t0236300-01	Rice	cytosol	37.89	32.28
Os09t0381600-01	Rice	cytosol	41.61	32.21
PGSC0003DMT400055171	Potato	cytosol	34.78	31.64
Zm00001d044783_P001	Maize	cytosol	34.16	31.61
HORVU5Hr1G059690.7	Barley	nucleus	39.13	31.03
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	37.27	30.15
TraesCS2A01G084700.1	Wheat	cytosol	37.27	30.0
TraesCS2A01G084600.1	Wheat	cytosol	36.65	29.8
TraesCS2D01G082500.1	Wheat	cytosol	36.02	29.74
TraesCS2D01G082300.1	Wheat	cytosol	36.65	29.5
TraesCS2B01G099100.1	Wheat	nucleus	36.65	29.5
TraesCS2B01G099400.1	Wheat	cytosol	36.65	29.21
Zm00001d052277_P001	Maize	cytosol	30.43	29.17
HORVU6Hr1G076380.4	Barley	cytosol	31.06	29.07
TraesCS2A01G084400.1	Wheat	cytosol	36.02	29.0
TraesCS2B01G099200.1	Wheat	nucleus	36.02	29.0
Os02t0741700-01	Rice	cytosol	29.81	28.92
TraesCS2A01G084500.1	Wheat	cytosol	36.65	28.78
HORVU7Hr1G039360.7	Barley	cytosol	31.06	28.74
TraesCS2D01G082600.1	Wheat	cytosol	36.02	28.71
HORVU7Hr1G039390.1	Barley	cytosol	29.19	28.31
HORVU2Hr1G013820.4	Barley	cytosol	35.4	28.22
TraesCS2B01G098900.1	Wheat	nucleus, plastid	25.47	22.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400083024	EnsemblPlantsGene:PGSC0003DMG400033027	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF5	PFAM:PF14009
PGSC:PGSC0003DMG400033027	SEG:seg	UniParc:UPI000296F399	UniProt:M1D6C6	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400033027]

Coordinates

chr6:-:52155803..52156837

Molecular Weight (calculated)

18025.8 Da

IEP (calculated)

10.314

GRAVY (calculated)

-0.520

Length

161 amino acids

Sequence
(BLAST)

001: MGNCQAIDNA ALLLQHPNGK VEKLYSSVTA HQIMKINSGH YVSLLLTTTT TTTTNNNTPV RVRRIKLLKP NDSLVLGQIY RLVTAQEVMK GLCAKKYAKL
101: KQLEYSCEKL TQKSNLNLKE SVTRSVQENS KQVKQEKHRD STGARCRAWH PSLQSISEAA C

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.