Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G339300.1 | Wheat | cytosol | 81.67 | 81.67 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 81.67 | 81.67 |
| KXG30786 | Sorghum | cytosol | 63.89 | 68.45 |
| Zm00001d017998_P001 | Maize | cytosol | 63.33 | 65.9 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 60.0 | 62.79 |
| TraesCS7A01G192700.1 | Wheat | cytosol | 57.22 | 61.68 |
| Os02t0741700-01 | Rice | cytosol | 56.11 | 60.84 |
| Zm00001d052277_P001 | Maize | cytosol | 55.56 | 59.52 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 43.89 | 57.66 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 47.22 | 50.9 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 47.22 | 48.3 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 48.33 | 47.8 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 47.78 | 46.49 |
| KRH74672 | Soybean | cytosol | 42.22 | 44.19 |
| TraesCS5A01G200100.1 | Wheat | cytosol | 48.33 | 44.16 |
| KRG99257 | Soybean | cytosol | 41.67 | 43.1 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 41.11 | 42.29 |
| KRH45741 | Soybean | cytosol | 41.11 | 42.05 |
| KRH69484 | Soybean | cytosol | 40.0 | 41.86 |
| Solyc05g006030.2.1 | Tomato | cytosol | 38.33 | 41.57 |
| CDY30923 | Canola | cytosol | 40.0 | 40.68 |
| Bra027820.1-P | Field mustard | cytosol | 40.0 | 40.68 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 37.22 | 40.61 |
| CDY69854 | Canola | cytosol | 39.44 | 40.34 |
| CDY70563 | Canola | cytosol | 40.0 | 40.22 |
| Solyc06g071320.2.1 | Tomato | cytosol | 34.44 | 40.0 |
| TraesCS2A01G084400.1 | Wheat | cytosol | 44.44 | 40.0 |
| TraesCS2A01G084500.1 | Wheat | cytosol | 45.56 | 40.0 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 36.67 | 39.76 |
| Bra000609.1-P | Field mustard | cytosol | 34.44 | 39.49 |
| AT1G60010.1 | Thale cress | cytosol | 37.78 | 39.31 |
| TraesCS2A01G084700.1 | Wheat | cytosol | 43.33 | 39.0 |
| AT5G50090.1 | Thale cress | cytosol | 34.44 | 38.99 |
| AT5G62900.1 | Thale cress | cytosol | 34.44 | 38.51 |
| PGSC0003DMT400063216 | Potato | cytosol | 40.0 | 38.5 |
| TraesCS2A01G084600.1 | Wheat | cytosol | 42.22 | 38.38 |
| Bra035410.1-P | Field mustard | cytosol | 37.22 | 38.29 |
| CDY24507 | Canola | cytosol | 37.22 | 38.29 |
| CDY00334 | Canola | nucleus | 33.89 | 38.12 |
| Bra010130.1-P | Field mustard | nucleus | 33.89 | 38.12 |
| CDX84364 | Canola | cytosol | 33.89 | 38.12 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 38.89 | 38.04 |
| PGSC0003DMT400083024 | Potato | cytosol | 33.89 | 37.89 |
| CDY21433 | Canola | cytosol | 32.78 | 37.58 |
| CDY34887 | Canola | cytosol | 34.44 | 37.35 |
| Bra031717.1-P | Field mustard | cytosol | 34.44 | 37.35 |
| KRH03351 | Soybean | cytosol | 37.22 | 36.81 |
| CDY07805 | Canola | nucleus | 33.89 | 36.75 |
| KRH57030 | Soybean | cytosol | 36.67 | 36.67 |
| Solyc03g114020.2.1 | Tomato | cytosol | 37.22 | 35.83 |
| KRH63480 | Soybean | cytosol | 33.89 | 35.26 |
| KRH54436 | Soybean | cytosol | 35.0 | 34.81 |
| CDX87268 | Canola | cytosol | 29.44 | 33.12 |
| Bra035874.1-P | Field mustard | cytosol | 30.56 | 32.93 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 36.67 | 29.2 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G309500.1 | EnsemblPlantsGene:TraesCS6A01G309500 | InterPro:DUF4228_plant | ncoils:Coil | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF6 |
| PFAM:PF14009 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6A:+:545648074..545649319
Molecular Weight (calculated)
19878.3 Da
IEP (calculated)
7.772
GRAVY (calculated)
-0.776
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEVA AAVVQHPGGR VERLYWSTPA AEVMRANPGH YVALVTLRVA EERQDADGGG ARRTVRLTRV KLLKPKETLL LGHAYRLITA NEVTKAVQAR
101: KEEKLRKARQ QLQQLELSTR QSKLRPAADG DDVDDDDDEA SLDESLDQLA RQDGGDGHRS SGARHRQWRP SLHSIDEAAS
101: KEEKLRKARQ QLQQLELSTR QSKLRPAADG DDVDDDDDEA SLDESLDQLA RQDGGDGHRS SGARHRQWRP SLHSIDEAAS
001: MGNCQAVNAA VLVLQHPGGI IDRYYSSVSV TEVMAMYPGH YVSLIIPLSE EEEKNIPATE KGDDKKQRKA VRFTRVQLLR PTENLVLGHA YRLITSQEVM
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS
Arabidopsis Description
At1g10530 [Source:UniProtKB/TrEMBL;Acc:Q7XJ59]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.