CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83579
CDX99733
CDY13606
CDY40986

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10530.1	CDX83579	AT3G26030.1	21798944
AT1G10530.1	CDX99733	AT3G26030.1	21798944
AT1G10530.1	CDY13606	AT3G26030.1	21798944
AT1G10530.1	CDY40986	AT3G26030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031717.1-P	Field mustard	cytosol	97.59	97.59
CDY34887	Canola	cytosol	97.59	97.59
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	78.31	78.31
CDY24507	Canola	cytosol	57.83	54.86
CDY69854	Canola	cytosol	57.23	53.98
CDY30923	Canola	cytosol	56.63	53.11
CDY70563	Canola	cytosol	56.63	52.51
PGSC0003DMT400040233	Potato	mitochondrion	51.81	52.12
Solyc05g006030.2.1	Tomato	cytosol	51.2	51.2
VIT_01s0026g00730.t01	Wine grape	cytosol	51.81	49.14
KRH69484	Soybean	cytosol	48.8	47.09
KRH74672	Soybean	cytosol	47.59	45.93
KRG99257	Soybean	cytosol	46.99	44.83
KRH45741	Soybean	cytosol	46.99	44.32
GSMUA_Achr5P23980_001	Banana	cytosol	33.73	40.88
CDX84364	Canola	cytosol	38.55	40.0
CDY00334	Canola	nucleus	38.55	40.0
KXG30786	Sorghum	cytosol	39.16	38.69
GSMUA_Achr3P06040_001	Banana	cytosol	40.96	38.64
CDY21433	Canola	cytosol	35.54	37.58
GSMUA_Achr9P28200_001	Banana	cytosol	37.35	37.13
TraesCS7D01G194000.1	Wheat	cytosol	34.94	35.8
EER96686	Sorghum	cytosol	38.55	35.75
KXG19676	Sorghum	cytosol	37.35	35.63
TraesCS7B01G098100.1	Wheat	cytosol	35.54	35.54
TraesCS7A01G192700.1	Wheat	cytosol	35.54	35.33
Zm00001d017998_P001	Maize	cytosol	36.14	34.68
GSMUA_Achr9P18270_001	Banana	cytosol	37.95	34.62
CDX87268	Canola	cytosol	33.13	34.38
Zm00001d052277_P001	Maize	cytosol	34.34	33.93
TraesCS6A01G309500.1	Wheat	cytosol	36.75	33.89
Zm00001d037251_P001	Maize	cytosol	36.75	33.7
Zm00001d020348_P001	Maize	cytosol	37.35	33.7
OQU80443	Sorghum	cytosol	37.35	33.51
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	37.35	33.51
TraesCS5A01G200100.1	Wheat	cytosol	39.16	32.99
TraesCS6D01G288900.1	Wheat	cytosol	35.54	32.78
TraesCS6B01G339300.1	Wheat	cytosol	35.54	32.78
Os02t0741700-01	Rice	cytosol	32.53	32.53
TraesCS5D01G205700.1	Wheat	cytosol	39.16	32.5
TraesCS5B01G198500.1	Wheat	cytosol	39.16	32.5
Os06t0236300-01	Rice	cytosol	36.75	32.28
Os09t0381600-01	Rice	cytosol	40.36	32.21
Zm00001d044783_P001	Maize	cytosol	33.73	32.18
HORVU5Hr1G059690.7	Barley	nucleus	39.16	32.02
TraesCS5B01G198400.1	Wheat	cytosol	38.55	32.0
HORVU6Hr1G076380.4	Barley	cytosol	33.13	31.98
Zm00001d032324_P001	Maize	cytosol	35.54	31.72
HORVU7Hr1G039390.1	Barley	cytosol	29.52	29.52
CDY18668	Canola	nucleus	31.33	29.05
CDY43585	Canola	nucleus	30.72	28.98
Os08t0420700-01	Rice	cytosol, nucleus, plastid	32.53	28.57
CDY37844	Canola	nucleus	30.72	28.49
TraesCS2A01G084600.1	Wheat	cytosol	33.73	28.28
CDX81304	Canola	nucleus	31.33	28.26
HORVU7Hr1G039360.7	Barley	cytosol	29.52	28.16
TraesCS2A01G084700.1	Wheat	cytosol	33.73	28.0
TraesCS2B01G099400.1	Wheat	cytosol	33.73	27.72
HORVU2Hr1G013820.4	Barley	cytosol	33.73	27.72
TraesCS2D01G082500.1	Wheat	cytosol	32.53	27.69
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	33.13	27.64
TraesCS2D01G082300.1	Wheat	cytosol	33.13	27.5
TraesCS2D01G082600.1	Wheat	cytosol	32.53	26.73
TraesCS2B01G099200.1	Wheat	nucleus	31.93	26.5
TraesCS2A01G084500.1	Wheat	cytosol	32.53	26.34
TraesCS2B01G099100.1	Wheat	nucleus	31.33	26.0
TraesCS2A01G084400.1	Wheat	cytosol	31.33	26.0
CDY08733	Canola	nucleus	25.3	25.45
CDY36508	Canola	nucleus	24.7	24.85
TraesCS2B01G098900.1	Wheat	nucleus, plastid	20.48	18.78

Protein Annotations

EnsemblPlants:CDY07805	EnsemblPlantsGene:GSBRNA2T00124948001	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF4	PFAM:PF14009
ProteinID:CDY07805	ProteinID:CDY07805.1	UniParc:UPI0004EE57D6	UniProt:A0A078F069	MapMan:35.2	:

Description

BnaC03g48170DBnaC03g48170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F069]

Coordinates

chrLK031981:-:105467..106345

Molecular Weight (calculated)

18743.0 Da

IEP (calculated)

10.503

GRAVY (calculated)

-0.518

Length

166 amino acids

Sequence
(BLAST)

001: MGNCQTINAA ALVLQHPGGK IDRYYSSISV SEIMSMYPGH YVCLIIPLTE EEEKNIPATV KRDEKKHKKG VRFTRVQLLR PTDSLVLGHA YRLITSQEVM
101: KVLREKKCAK TKKHHAEAMT TVKKLLEKNV PEKKQGKQHR VLTSSASFLK SKAWKPSLQS ISEATS

Best Arabidopsis Sequence Match ( AT1G10530.1 )
(BLAST)

001: MGNCQAVNAA VLVLQHPGGI IDRYYSSVSV TEVMAMYPGH YVSLIIPLSE EEEKNIPATE KGDDKKQRKA VRFTRVQLLR PTENLVLGHA YRLITSQEVM
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS

Arabidopsis Description

At1g10530 [Source:UniProtKB/TrEMBL;Acc:Q7XJ59]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.