Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G192700.1 | Wheat | cytosol | 87.65 | 85.03 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 87.04 | 84.94 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 62.96 | 61.45 |
| KXG19676 | Sorghum | cytosol | 64.2 | 59.77 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 62.96 | 58.62 |
| Zm00001d037251_P001 | Maize | cytosol | 63.58 | 56.91 |
| Os06t0236300-01 | Rice | cytosol | 66.05 | 56.61 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 46.91 | 55.47 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 61.11 | 55.0 |
| Zm00001d044783_P001 | Maize | cytosol | 53.09 | 49.43 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 50.62 | 49.1 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 54.94 | 48.9 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 51.85 | 47.73 |
| KRH74672 | Soybean | cytosol | 46.3 | 43.6 |
| KRH69484 | Soybean | cytosol | 45.06 | 42.44 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 48.15 | 42.16 |
| KRG99257 | Soybean | cytosol | 45.06 | 41.95 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 45.06 | 41.71 |
| KRH45741 | Soybean | cytosol | 44.44 | 40.91 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 50.0 | 40.5 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 49.38 | 40.2 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 48.15 | 40.0 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 48.77 | 39.5 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 48.15 | 38.61 |
| CDY30923 | Canola | cytosol | 41.98 | 38.42 |
| AT5G50090.1 | Thale cress | cytosol | 37.65 | 38.36 |
| KRH03351 | Soybean | cytosol | 42.59 | 37.91 |
| Bra000609.1-P | Field mustard | cytosol | 36.42 | 37.58 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 38.27 | 37.58 |
| AT1G60010.1 | Thale cress | cytosol | 40.12 | 37.57 |
| Bra027820.1-P | Field mustard | cytosol | 40.74 | 37.29 |
| KRH57030 | Soybean | cytosol | 41.36 | 37.22 |
| Bra035410.1-P | Field mustard | cytosol | 40.12 | 37.14 |
| CDY24507 | Canola | cytosol | 40.12 | 37.14 |
| CDY70563 | Canola | cytosol | 40.74 | 36.87 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 37.65 | 36.75 |
| CDY69854 | Canola | cytosol | 39.51 | 36.36 |
| CDY21433 | Canola | cytosol | 35.19 | 36.31 |
| CDY00334 | Canola | nucleus | 35.8 | 36.25 |
| CDX84364 | Canola | cytosol | 35.8 | 36.25 |
| Bra010130.1-P | Field mustard | nucleus | 35.8 | 36.25 |
| Solyc05g006030.2.1 | Tomato | cytosol | 37.04 | 36.14 |
| AT5G62900.1 | Thale cress | cytosol | 35.8 | 36.02 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 40.74 | 35.87 |
| Solyc03g114020.2.1 | Tomato | cytosol | 41.36 | 35.83 |
| Solyc06g071320.2.1 | Tomato | cytosol | 33.95 | 35.48 |
| PGSC0003DMT400063216 | Potato | cytosol | 40.74 | 35.29 |
| KRH63480 | Soybean | cytosol | 37.65 | 35.26 |
| CDY07805 | Canola | nucleus | 35.8 | 34.94 |
| KRH54436 | Soybean | cytosol | 38.89 | 34.81 |
| PGSC0003DMT400083024 | Potato | cytosol | 34.57 | 34.78 |
| Bra031717.1-P | Field mustard | cytosol | 35.19 | 34.34 |
| CDY34887 | Canola | cytosol | 35.19 | 34.34 |
| Bra035874.1-P | Field mustard | cytosol | 33.33 | 32.34 |
| CDX87268 | Canola | cytosol | 29.63 | 30.0 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 38.27 | 27.43 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G194000.1 | EnsemblPlantsGene:TraesCS7D01G194000 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF6 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:150900550..150902791
Molecular Weight (calculated)
18201.4 Da
IEP (calculated)
10.500
GRAVY (calculated)
-0.888
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEEA TVVVQHPGGG RVERLYWATS AAEVMRANPG HYVALVTLRV TEEEGQRQRR GAVRLTRVKL LKPRDTLQLG HAYRLIAVDE VTRAVQARKE
101: EKTRRAQRQR QQASAGNDQS LMDEGLDQLE QQDRDGHPSS STKGSRHRQW RPSLHSIAEV SS
101: EKTRRAQRQR QQASAGNDQS LMDEGLDQLE QQDRDGHPSS STKGSRHRQW RPSLHSIAEV SS
001: MGNCQAVNAA VLVLQHPGGI IDRYYSSVSV TEVMAMYPGH YVSLIIPLSE EEEKNIPATE KGDDKKQRKA VRFTRVQLLR PTENLVLGHA YRLITSQEVM
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS
101: KVLREKKSAK TKKHQIEKTT TAKKFSDKKV PEKKQGKQFR VIRNSTSLLK SKTWRPSLQS ISEATS
Arabidopsis Description
At1g10530 [Source:UniProtKB/TrEMBL;Acc:Q7XJ59]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.